RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 PLEKHJ1Q9NW61 149 aa11.93□□□□□ -0.5
USP4-212ENST00000486549 C1RLQ9NZP8 487 aa11.93□□□□□ -0.5
USP4-212ENST00000486549 A0A1W2PPE3 182 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 POM121CA8CG34 1229 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 IGLV1-47P01700 117 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 SDC2P34741 201 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 RAG2P55895 527 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 AANATQ16613 207 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 SHISA2Q6UWI4 295 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 GAPTQ8N292 157 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 OR10A7Q8NGE5 316 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 OR1L1Q8NH94 360 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 SETD6Q8TBK2 473 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 CENPOQ9BU64 300 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 MMP28Q9H239 520 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 DPM3Q9P2X0 92 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 FBLN5Q9UBX5 448 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 PSG11Q9UQ72 335 aa11.92□□□□□ -0.5
USP4-212ENST00000486549 NOTOA8MTQ0 251 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 LEUTXA8MZ59 168 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 BUB1B-PAK6H3BSN5 160 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 J3QR06 171 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 F2RL2O00254 374 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 LDLRAD4O15165 306 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 SPINT2O43291 252 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 HBZP02008 142 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 CLEC2LP0C7M8 214 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 MDKP21741 143 aaPredicted RBP11.91□□□□□ -0.5
USP4-212ENST00000486549 CEACAM3P40198 252 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 EFNB2P52799 333 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 RELBQ01201 579 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 FAM53AQ6NSI3 398 aaPredicted RBP11.91□□□□□ -0.5
USP4-212ENST00000486549 TRAT1Q6PIZ9 186 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 C5orf24Q7Z6I8 188 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 TPRA1Q86W33 373 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 FAM89BQ8N5H3 189 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 OR56B1Q8NGI3 324 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 OR10V1Q8NGI7 309 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 PIFOQ8TCI5 191 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 ARHGAP5-AS1Q96IT6 56 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 TAF9BQ9HBM6 251 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 KCNIP1Q9NZI2 227 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 GNG12Q9UBI6 72 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 AK3Q9UIJ7 227 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 DAPK2Q9UIK4 370 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 RAB22AQ9UL26 194 aa11.91□□□□□ -0.5
USP4-212ENST00000486549 AMMECR1Q9Y4X0 333 aaPredicted RBP11.91□□□□□ -0.5
USP4-212ENST00000486549 A0A1B0GUS0 222 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 FOXI3A8MTJ6 420 aaPredicted RBP11.9□□□□□ -0.5
USP4-212ENST00000486549 VGLL3A8MV65 326 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 RPL15P61313 204 aaKnown RBP11.9□□□□□ -0.5
USP4-212ENST00000486549 ANK2Q01484 3957 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 TIMM50Q3ZCQ8 353 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 TPTE2P1Q5T6R2 138 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 SFXN4Q6P4A7 337 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 Q6ZTK2 550 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 TMEM219Q86XT9 240 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 OR10X1Q8NGY0 326 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 OR4F5Q8NH21 305 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 CREB3L1Q96BA8 519 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 YIPF6Q96EC8 236 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 HDHD3Q9BSH5 251 aaPredicted RBP11.9□□□□□ -0.5
USP4-212ENST00000486549 ZNF747Q9BV97 191 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 PECRQ9BY49 303 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 RAB9BQ9NP90 201 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 GFOD1Q9NXC2 390 aa11.9□□□□□ -0.5
USP4-212ENST00000486549 A0A075B6Q4 140 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 TRIM64CA6NLI5 447 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 CHST1O43916 411 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 AIREO43918 545 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 SNRPBP14678 240 aaKnown RBP11.89□□□□□ -0.51
USP4-212ENST00000486549 TGFBR1P36897 503 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 TMEM50BP56557 158 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 LOXL3P58215 753 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 LSM3P62310 102 aaKnown RBP11.89□□□□□ -0.51
USP4-212ENST00000486549 MOGAT2Q3SYC2 334 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 SLC16A12Q6ZSM3 486 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 OR52M1Q8NGK5 317 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 TOMM40LQ969M1 308 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 RPEQ96AT9 228 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 BEX1Q9HBH7 125 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 MBNL3Q9NUK0 354 aaKnown RBP11.89□□□□□ -0.51
USP4-212ENST00000486549 HSF4Q9ULV5 492 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 TCF19Q9Y242 345 aa11.89□□□□□ -0.51
USP4-212ENST00000486549 LY6LH3BQJ8 138 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 NDUFA7O95182 113 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 NAPSAO96009 420 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 SMIM18P0DKX4 95 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 RAB6AP20340 208 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 CD24P25063 80 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 ARHGDIBP52566 201 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 MADCAM1Q13477 382 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 PLAC9Q5JTB6 97 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 OLFML2AQ68BL7 652 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 Q6ZPA2 131 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 Q6ZSV7 163 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 OR52L2PQ8NGH6 319 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 LGALS14Q8TCE9 139 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 RAB3CQ96E17 227 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 CMSS1Q9BQ75 279 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms