RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TIMM23O14925 209 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 MMP23AO75900 390 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 FBP1P09467 338 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 LGALS4P56470 323 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 TMEM50BP56557 158 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 DYNC1I2Q13409 638 aaKnown RBP14.38□□□□□ -0.11
COL7A1-205ENST00000465238 MIDNQ504T8 468 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 SLC16A12Q6ZSM3 486 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 GAPTQ8N292 157 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 LINC01006Q8NI28 216 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 RFESDQ8TAC1 157 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 LGALS14Q8TCE9 139 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 ARHGAP5-AS1Q96IT6 56 aa14.38□□□□□ -0.11
COL7A1-205ENST00000465238 NAA50Q9GZZ1 169 aaKnown RBP14.38□□□□□ -0.11
COL7A1-205ENST00000465238 CHMP1AQ9HD42 196 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-205ENST00000465238 FOXI3A8MTJ6 420 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-205ENST00000465238 ORC5O43913 435 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 GABARAPO95166 117 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 NFYBP25208 207 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 SAA4P35542 130 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 SCAND1P57086 179 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 C6orf183Q5T699 404 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 TRAT1Q6PIZ9 186 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 OR10A7Q8NGE5 316 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 OR10R2Q8NGX6 335 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 ARL11Q969Q4 196 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 RAB3CQ96E17 227 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 CLEC7AQ9BXN2 247 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 PECRQ9BY49 303 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 RIMS4Q9H426 269 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-205ENST00000465238 RAB9BQ9NP90 201 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 IDI2-AS1Q9NZ38 188 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 KCNIP1Q9NZI2 227 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 ZNRD1Q9P1U0 126 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 ETV7Q9Y603 341 aa14.37□□□□□ -0.11
COL7A1-205ENST00000465238 BTBD17A6NE02 478 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 NPIPB11E5RHQ5 1161 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 PAHP00439 452 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 ARG1P05089 322 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 SSTR5P35346 364 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 GDNFP39905 211 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 CTF1Q16619 201 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 LTC4SQ16873 150 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 RTN4RL2Q86UN3 420 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 CLVS1Q8IUQ0 354 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-205ENST00000465238 ABHD12Q8N2K0 398 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 OR11H6Q8NGC7 330 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 MRPL30Q8TCC3 161 aaKnown RBP14.36□□□□□ -0.11
COL7A1-205ENST00000465238 KIRREL1Q96J84 757 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 CYYR1Q96J86 154 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 MMP27Q9H306 513 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 LINC00574Q9H8X3 128 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 ABRACLQ9P1F3 81 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 AK3Q9UIJ7 227 aa14.36□□□□□ -0.11
COL7A1-205ENST00000465238 IGHV2-26A0A0B4J1V2 119 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 RAB27BO00194 218 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 TOR1AO14656 332 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 SPINT2O43291 252 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 RCC1P18754 421 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-205ENST00000465238 PROK1P58294 105 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 KRTAP10-3P60369 221 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 MRPS15P82914 257 aaKnown RBP14.35□□□□□ -0.11
COL7A1-205ENST00000465238 MOGAT2Q3SYC2 334 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 PLAC9Q5JTB6 97 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 SETD6Q8TBK2 473 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 SLC25A46Q96AG3 418 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 PHF21AQ96BD5 680 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 RHBDL2Q9NX52 303 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 VPREB3Q9UKI3 123 aa14.35□□□□□ -0.11
COL7A1-205ENST00000465238 A0A075B6Q4 140 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 FAM172BPA6NC97 362 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 C12orf77C9JDV5 145 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 C15orf65H3BRN8 121 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 SCGNO76038 276 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 PRRX1P54821 245 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 ARL6IP1Q15041 203 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 ZNF626Q68DY1 528 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 DHRS7BQ6IAN0 325 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-205ENST00000465238 BAIAP2L2Q6UXY1 529 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 Q6ZSV7 163 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 PRR18Q8N4B5 295 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 OR5H6Q8NGV6 325 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 UBALD1Q8TB05 177 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 CMSS1Q9BQ75 279 aaKnown RBP14.34□□□□□ -0.11
COL7A1-205ENST00000465238 DCSTAMPQ9H295 470 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 C16orf95Q9H693 158 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 TAF9BQ9HBM6 251 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 MBNL3Q9NUK0 354 aaKnown RBP14.34□□□□□ -0.11
COL7A1-205ENST00000465238 SPATA2Q9UM82 520 aa14.34□□□□□ -0.11
COL7A1-205ENST00000465238 TBL2Q9Y4P3 447 aaKnown RBP14.34□□□□□ -0.11
COL7A1-205ENST00000465238 A0A087X0M5 115 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 A0A1B0GX30 115 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 ODF3BA8MYP8 253 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 SDCBPO00560 298 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-205ENST00000465238 NAPSAO96009 420 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 CD3GP09693 182 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 HIST1H1DP16402 221 aaKnown RBP14.33□□□□□ -0.12
COL7A1-205ENST00000465238 CD34P28906 385 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 RORCP51449 518 aa14.33□□□□□ -0.12
COL7A1-205ENST00000465238 ZNF554Q86TJ5 538 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms