RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZNF492Q9P255 531 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 ACOT9Q9Y305 439 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 SLC22A7Q9Y694 548 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 MTCH2Q9Y6C9 303 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 COL5A1P20908 1838 aaPredicted RBP1.74□□□□□ -2.13
VPS41-207ENST00000439468 ZNF236Q9UL36 1845 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 ANKRD36CQ5JPF3 1778 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 SETD2Q9BYW2 2564 aaPredicted RBP1.74□□□□□ -2.13
VPS41-207ENST00000439468 ABCA2Q9BZC7 2435 aa1.74□□□□□ -2.13
VPS41-207ENST00000439468 CELSR1Q9NYQ6 3014 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 DOPEY2Q9Y3R5 2298 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 A0A1B0GW15 77 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 RAB19A4D1S5 217 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 RBFOX3A6NFN3 312 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 GATCO43716 136 aaKnown RBP1.73□□□□□ -2.13
VPS41-207ENST00000439468 KLHL2O95198 593 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 CD8AP01732 235 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 TRGV3P03979 118 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 PRB1P04280 392 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 HLA-DMAP28067 261 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 TNNC1P63316 161 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 BAMBIQ13145 260 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 SSX1Q16384 188 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 TMEM241Q24JQ0 296 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 FAM104BQ5XKR9 115 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 FA2HQ7L5A8 372 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 LINC00596Q86U02 117 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 OR4C13Q8NGP0 309 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 LRRC20Q8TCA0 184 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 CPB2Q96IY4 423 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 PPP1R36Q96LQ0 422 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 ZNF75AQ96N20 296 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 RILPQ96NA2 401 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 QKIQ96PU8 341 aaKnown RBP eCLIP1.73□□□□□ -2.13
VPS41-207ENST00000439468 PEBP4Q96S96 227 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 VAT1Q99536 393 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 COPS4Q9BT78 406 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 POMKQ9H5K3 350 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 PRORYQ9H606 182 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 VCX3AQ9NNX9 186 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 AGPAT3Q9NRZ7 376 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 RMND1Q9NWS8 449 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 PCNX1Q96RV3 2341 aa1.73□□□□□ -2.13
VPS41-207ENST00000439468 NID2Q14112 1375 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 RTL9Q8NET4 1388 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 UTP20O75691 2785 aaKnown RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 TLN1Q9Y490 2541 aaKnown RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 LRBAP50851 2863 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 IGKV1OR2-108A0A075B7D4 117 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 OR6C70A6NIJ9 312 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 OR2AT4A6NND4 320 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 hCG_2039718K7EN88 272 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 ZNF593O00488 134 aaPredicted RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 ZMPSTE24O75844 475 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 KCNK2O95069 426 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 IGHG2P01859 326 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 CDK1P06493 297 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 BGNP21810 368 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 CCNOP22674 350 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 COL8A2P25067 703 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 SLC6A1P30531 599 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 UBE2KP61086 200 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 FLI1Q01543 452 aaPredicted RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 GPR176Q14439 515 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 ZNF235Q14590 738 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 TOMM34Q15785 309 aaPredicted RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 ZNF404Q494X3 552 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 SPIN3Q5JUX0 258 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 CLLU1OSQ5K130 101 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 LDLRAD2Q5SZI1 272 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 RESP18Q5W5W9 173 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 ZNF773Q6PK81 442 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 TRMT10CQ7L0Y3 403 aaKnown RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 TMEM144Q7Z5S9 345 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 OR6K2Q8NGY2 324 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 OR8K3Q8NH51 312 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 LGALS14Q8TCE9 139 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 BLNKQ8WV28 456 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 OR2M4Q96R27 311 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 CIB1Q99828 191 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 RAB1BQ9H0U4 201 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 DSN1Q9H410 356 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 RDH14Q9HBH5 336 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 VAPAQ9P0L0 249 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 HMGXB4Q9UGU5 601 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 NXT1Q9UKK6 140 aaKnown RBP1.72□□□□□ -2.13
VPS41-207ENST00000439468 STK38LQ9Y2H1 464 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 NUP98P52948 1817 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 PATJQ8NI35 1801 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 SEC16AO15027 2179 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 ROCK1Q13464 1354 aa1.72□□□□□ -2.13
VPS41-207ENST00000439468 CDK5RAP2Q96SN8 1893 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 MGAQ8IWI9 3026 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 KIR2DS1A0A191URI9 304 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 A0A1B0GXF2 115 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 PSMD11O00231 422 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 FFAR1O14842 300 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 COX7A2P2O60397 106 aa1.71□□□□□ -2.14
VPS41-207ENST00000439468 IGKV4-1P06312 121 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms