RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 H3BUI4 141 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 F2RL2O00254 374 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 MMP23AO75900 390 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 CD37P11049 281 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 IGLL1P15814 213 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 RANBP1P43487 201 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 OR5AU1Q8NGC0 362 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 OR13A1Q8NGR1 328 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 KCNK15Q9H427 330 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 VCX3AQ9NNX9 186 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 RCC2Q9P258 522 aaKnown RBP22.8■■□□□ 1.24
HMGB1-205ENST00000399494 STUB1Q9UNE7 303 aa22.8■■□□□ 1.24
HMGB1-205ENST00000399494 TRAV1-2A0A0B4J238 106 aa22.79■■□□□ 1.24
HMGB1-205ENST00000399494 ARSBP15848 533 aa22.79■■□□□ 1.24
HMGB1-205ENST00000399494 TSPAN14Q8NG11 270 aa22.79■■□□□ 1.24
HMGB1-205ENST00000399494 MRGPRDQ8TDS7 321 aa22.79■■□□□ 1.24
HMGB1-205ENST00000399494 CLEC7AQ9BXN2 247 aa22.79■■□□□ 1.24
HMGB1-205ENST00000399494 SSR3Q9UNL2 185 aa22.79■■□□□ 1.24
HMGB1-205ENST00000399494 A0A087WXM4 84 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 IGHV2-26A0A0B4J1V2 119 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 KBTBD11-OT1A0A1B0GTJ5 212 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 CD33P20138 364 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 FUT3P21217 361 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 RPS27AP62979 156 aaKnown RBP22.78■■□□□ 1.24
HMGB1-205ENST00000399494 SYT6Q5T7P8 510 aaPredicted RBP22.78■■□□□ 1.24
HMGB1-205ENST00000399494 ETAA1Q9NY74 926 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 CALYQ9NYX4 217 aa22.78■■□□□ 1.24
HMGB1-205ENST00000399494 A0A1W2PRX2 142 aa22.77■■□□□ 1.24
HMGB1-205ENST00000399494 AIPO00170 330 aa22.77■■□□□ 1.24
HMGB1-205ENST00000399494 C17orf58Q2M2W7 97 aa22.77■■□□□ 1.24
HMGB1-205ENST00000399494 NKAPLQ5M9Q1 402 aa22.77■■□□□ 1.24
HMGB1-205ENST00000399494 TXNL4BQ9NX01 149 aaKnown RBP22.77■■□□□ 1.24
HMGB1-205ENST00000399494 TRAV39A0A0B4J263 110 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 FAM172BPA6NC97 362 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 TMEM14DPA8MWL7 114 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 PDCD6O75340 191 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 RAB3BP20337 219 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 NFYBP25208 207 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 CLDN12P56749 244 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 UNC119Q13432 240 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 TCTEX1D4Q5JR98 221 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 HES5Q5TA89 166 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 ZNF497Q6ZNH5 498 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 OR2W3Q7Z3T1 314 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 ABHD12Q8N2K0 398 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 NDNFQ8TB73 568 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 CCDC107Q8WV48 283 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 NEDD4LQ96PU5 975 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 NBEAL2Q6ZNJ1 2754 aa22.76■■□□□ 1.23
HMGB1-205ENST00000399494 UBE2QL1A1L167 161 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 IL1AP01583 271 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 GLAP06280 429 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 FGF9P31371 208 aaPredicted RBP22.75■■□□□ 1.23
HMGB1-205ENST00000399494 GDNFP39905 211 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 BAIAP2L2Q6UXY1 529 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 RTN4RL2Q86UN3 420 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 OR51D1Q8NGF3 324 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 URM1Q9BTM9 101 aaKnown RBP22.75■■□□□ 1.23
HMGB1-205ENST00000399494 IDI2-AS1Q9NZ38 188 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 STEAP1Q9UHE8 339 aa22.75■■□□□ 1.23
HMGB1-205ENST00000399494 SHISA3A0PJX4 238 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 OR10A3P58181 314 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 QRFPP83859 136 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 LTC4SQ16873 150 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 SIGIRRQ6IA17 410 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 CENPVQ7Z7K6 275 aaPredicted RBP22.74■■□□□ 1.23
HMGB1-205ENST00000399494 FAM3DQ96BQ1 224 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 OR51E2Q9H255 320 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 TRAPPC2LQ9UL33 140 aa22.74■■□□□ 1.23
HMGB1-205ENST00000399494 K7EIL1 84 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 TOR1AO14656 332 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 MT-ND4P03905 459 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 CGB3P0DN86 165 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 CGB7P0DN87 165 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 CD36P16671 472 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 GZMHP20718 246 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 HTR1DP28221 377 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 SSTR5P35346 364 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 OR4P4Q8NGL7 312 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 RFESDQ8TAC1 157 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 ZNF596Q8TC21 504 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 KIRREL1Q96J84 757 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 CHCHD6Q9BRQ6 235 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 NICN1Q9BSH3 213 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 TM2D1Q9BX74 207 aa22.73■■□□□ 1.23
HMGB1-205ENST00000399494 CA11O75493 328 aa22.72■■□□□ 1.23
HMGB1-205ENST00000399494 C2orf76Q3KRA6 126 aa22.72■■□□□ 1.23
HMGB1-205ENST00000399494 VAX1Q5SQQ9 334 aa22.72■■□□□ 1.23
HMGB1-205ENST00000399494 C16orf82Q7Z2V1 217 aa22.72■■□□□ 1.23
HMGB1-205ENST00000399494 OR4K15Q8NH41 348 aa22.72■■□□□ 1.23
HMGB1-205ENST00000399494 ZNF286AQ9HBT8 521 aa22.72■■□□□ 1.23
HMGB1-205ENST00000399494 COL7A1Q02388 2944 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 LOC100506127A0A0U1RQW1 187 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 TCRBV4S1A1TA0A5B7 111 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 IFITM5A6NNB3 132 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 PF4V1P10720 104 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 CD24P25063 80 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 CHATP28329 748 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 BLVRBP30043 206 aaPredicted RBP22.71■■□□□ 1.23
HMGB1-205ENST00000399494 PRRX1P54821 245 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms