RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 AP2S1P53680 142 aaPredicted RBP12.48□□□□□ -0.41
CCDC47-201ENST00000225726 LINC01560Q8TB33 94 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 FAM222BQ8WU58 562 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 COQ2Q96H96 371 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 SEC22AQ96IW7 307 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 SUCNR1Q9BXA5 334 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 NMES1Q9C002 83 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 SLC5A7Q9GZV3 580 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 KCNJ16Q9NPI9 418 aa12.48□□□□□ -0.41
CCDC47-201ENST00000225726 CYCSP99999 105 aaKnown RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 SECTM1Q8WVN6 248 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 TAF9BQ9HBM6 251 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 KIF25Q9UIL4 384 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 OR2W1Q9Y3N9 320 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 E7EQL1 145 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 GNRHRP30968 328 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 AESQ08117 197 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 TMEM187Q14656 261 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 TESK1Q15569 626 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 C2CD4CQ8TF44 421 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 NARS2Q96I59 477 aaKnown RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 SHARPINQ9H0F6 387 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 IGHV3OR15-7A0A075B7D8 119 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 FXYD6-FXYD2A0A087WZ82 144 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 IGKV1D-13A0A0B4J2D9 117 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 C13orf42A0A1B0GVH6 325 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 OOEPA6NGQ2 149 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 GPR31O00270 319 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 ZNF737O75373 536 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 APOC3P02656 99 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 IGKV1-13P0DP09 117 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 TNFRSF1AP19438 455 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 GRNP28799 593 aaKnown RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 SNTB1Q13884 538 aaKnown RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 KRBOX4Q5JUW0 171 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 NANPQ8TBE9 248 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 IL1F10Q8WWZ1 152 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 SNX22Q96L94 193 aa12.47□□□□□ -0.41
CCDC47-201ENST00000225726 VRK1Q99986 396 aaPredicted RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 METTL8Q9H825 291 aaKnown RBP12.47□□□□□ -0.41
CCDC47-201ENST00000225726 M0R233 179 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 ADAP1O75689 374 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 C4BPBP20851 252 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 CD80P33681 288 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 TLE1Q04724 770 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 ZFP82Q8N141 532 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 PPP1R35Q8TAP8 253 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 OR1A1Q9P1Q5 309 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 OR5AC1P0C628 307 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 SLC25A4P12235 298 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 CDSNQ15517 529 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 LDLRAD3Q86YD5 345 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 LHFPL5Q8TAF8 219 aa12.46□□□□□ -0.41
CCDC47-201ENST00000225726 MPPED1O15442 326 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 CXCL2P19875 107 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 GABRA2P47869 451 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 DEFA5Q01523 94 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 BEX5Q5H9J7 111 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 ZNF818PQ6ZRF7 136 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 PPP1R1CQ8WVI7 109 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 PPP1R3CQ9UQK1 317 aa12.46□□□□□ -0.42
CCDC47-201ENST00000225726 CHD8Q9HCK8 2581 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 L7N2F9 121 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 ATG12O94817 140 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 IRF2P14316 349 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 TRAT1Q6PIZ9 186 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 PRR18Q8N4B5 295 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 LRTM2Q8N967 370 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 RNF115Q9Y4L5 304 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 PCNX1Q96RV3 2341 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 APOBEC3AP31941 199 aaPredicted RBP12.45□□□□□ -0.42
CCDC47-201ENST00000225726 EFNB3Q15768 340 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 C11orf87Q6NUJ2 197 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 NEUROG1Q92886 237 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 LURAP1Q96LR2 239 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 C2orf50Q96LR7 162 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 LINC00052Q96N35 136 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 EGLN1Q9GZT9 426 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 C12orf77C9JDV5 145 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 MGST3O14880 152 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 CYB5R3P00387 301 aaPredicted RBP12.45□□□□□ -0.42
CCDC47-201ENST00000225726 HOXB5P09067 269 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 GLIPR1P48060 266 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 LIAT1Q6ZQX7 453 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 SLC16A13Q7RTY0 426 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 OR10V1Q8NGI7 309 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 DNTTIP1Q9H147 329 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 CCL28Q9NRJ3 127 aa12.45□□□□□ -0.42
CCDC47-201ENST00000225726 HSD17B6O14756 317 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 ARPC5O15511 151 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 HSPA12AO43301 675 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 RNF224P0DH78 156 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 CCL8P80075 99 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 TBC1D26Q86UD7 250 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 C3orf85A0A1B0GTC6 90 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 TUBAL3A6NHL2 446 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 IFNA21P01568 189 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 HEXAP06865 529 aa12.44□□□□□ -0.42
CCDC47-201ENST00000225726 RPA2P15927 270 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms