RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PDCD5O14737 125 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 IL1AP01583 271 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 IGHV3-7P01780 117 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 HKR1P10072 659 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 JUNBP17275 347 aaPredicted RBP12.32□□□□□ -0.44
LIG1-219ENST00000600055 RAB3BP20337 219 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 GADD45AP24522 165 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 CHATP28329 748 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 FGF9P31371 208 aaPredicted RBP12.32□□□□□ -0.44
LIG1-219ENST00000600055 PSMD7P51665 324 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 RBM39Q14498 530 aaKnown RBP12.32□□□□□ -0.44
LIG1-219ENST00000600055 OR52W1Q6IF63 320 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 OR4P4Q8NGL7 312 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 OR4K15Q8NH41 348 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 LEAP2Q969E1 77 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 FAM3DQ96BQ1 224 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 SSX3Q99909 188 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 SULT4A1Q9BR01 284 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 CHCHD6Q9BRQ6 235 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 LPAR5Q9H1C0 372 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 RNF167Q9H6Y7 350 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 LINC00574Q9H8X3 128 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 STEAP1Q9UHE8 339 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 SSR3Q9UNL2 185 aa12.32□□□□□ -0.44
LIG1-219ENST00000600055 TBL2Q9Y4P3 447 aaKnown RBP12.32□□□□□ -0.44
LIG1-219ENST00000600055 TMEM272A0A1B0GTI8 110 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 NPIPB11E5RHQ5 1161 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 LDLRAD4O15165 306 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 GPR137BO60478 399 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 CD36P16671 472 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 SSX2Q16385 188 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 LRRC75BQ2VPJ9 315 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 FAM53AQ6NSI3 398 aaPredicted RBP12.31□□□□□ -0.44
LIG1-219ENST00000600055 OR2W3Q7Z3T1 314 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 C6orf201Q7Z4U5 140 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 C5orf24Q7Z6I8 188 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 NDNFQ8TB73 568 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 ARL11Q969Q4 196 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 NEDD4LQ96PU5 975 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 FAAP24Q9BTP7 215 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 MRPS26Q9BYN8 205 aaKnown RBP12.31□□□□□ -0.44
LIG1-219ENST00000600055 SCOCQ9UIL1 159 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 HILPDAQ9Y5L2 63 aa12.31□□□□□ -0.44
LIG1-219ENST00000600055 A0A087X0M5 115 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 LOC100506127A0A0U1RQW1 187 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 A0A1B0GX30 115 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 BTBD17A6NE02 478 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 IFITM5A6NNB3 132 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 C15orf65H3BRN8 121 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 SOCS1O15524 211 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 GLAP06280 429 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 SLC2A2P11168 524 aaPredicted RBP12.3□□□□□ -0.44
LIG1-219ENST00000600055 GZMHP20718 246 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 CD34P28906 385 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 BLVRBP30043 206 aaPredicted RBP12.3□□□□□ -0.44
LIG1-219ENST00000600055 RAB13P51153 203 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 RELBQ01201 579 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 FAM189A2Q15884 450 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 LY6EQ16553 131 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 KIAA2026Q5HYC2 2103 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 GAPTQ8N292 157 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 MRPL30Q8TCC3 161 aaKnown RBP12.3□□□□□ -0.44
LIG1-219ENST00000600055 PIFOQ8TCI5 191 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 MALSU1Q96EH3 234 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 C1RLQ9NZP8 487 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 VPREB3Q9UKI3 123 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 TRAPPC2LQ9UL33 140 aa12.3□□□□□ -0.44
LIG1-219ENST00000600055 C12orf77C9JDV5 145 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 TOR1AO14656 332 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 IGLV1-47P01700 117 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 CLEC2LP0C7M8 214 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 RCC1P18754 421 aaPredicted RBP12.29□□□□□ -0.44
LIG1-219ENST00000600055 HTR1DP28221 377 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 COMPP49747 757 aaPredicted RBP12.29□□□□□ -0.44
LIG1-219ENST00000600055 VEGFCP49767 419 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 GNG10P50151 68 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 EFNB2P52799 333 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 AWAT1Q58HT5 328 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 MINOS1Q5TGZ0 78 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 C12orf54Q6X4T0 127 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 FAM89BQ8N5H3 189 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 OR5R1Q8NH85 324 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 ZNF596Q8TC21 504 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 URM1Q9BTM9 101 aaKnown RBP12.29□□□□□ -0.44
LIG1-219ENST00000600055 CENPOQ9BU64 300 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 FBLN5Q9UBX5 448 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 MINOS1-NBL1R4GNA1 71 aa12.29□□□□□ -0.44
LIG1-219ENST00000600055 IGHV3-43A0A0B4J1X8 118 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 A0A1W2PPE3 182 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 TRIM64CA6NLI5 447 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 FOXI3A8MTJ6 420 aaPredicted RBP12.28□□□□□ -0.44
LIG1-219ENST00000600055 H3BUI4 141 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 ORC5O43913 435 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 CRYBA1P05813 215 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 IGHV3-43DP0DP04 118 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 CFPP27918 469 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 SDC2P34741 201 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 TMEM50BP56557 158 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 HLA-DRB5Q30154 266 aa12.28□□□□□ -0.44
LIG1-219ENST00000600055 PRR18Q8N4B5 295 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms