RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SSX2Q16385 188 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 ATAD3CQ5T2N8 411 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 LINC01006Q8NI28 216 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 BEX1Q9HBH7 125 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 IDI2-AS1Q9NZ38 188 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 TCF19Q9Y242 345 aa13.01□□□□□ -0.33
TRIM28-213ENST00000598355 TRRAPQ9Y4A5 3859 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 TRAV1-2A0A0B4J238 106 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 TRDV1A0A1B0GX56 115 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 SHISA3A0PJX4 238 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 FAM172BPA6NC97 362 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 MCRIP1C9JLW8 97 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 LY6LH3BQJ8 138 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 H3BUI4 141 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 ORC5O43913 435 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 CHST1O43916 411 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 CALRP27797 417 aaKnown RBP13□□□□□ -0.33
TRIM28-213ENST00000598355 CHATP28329 748 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 PROK1P58294 105 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 RBM39Q14498 530 aaKnown RBP13□□□□□ -0.33
TRIM28-213ENST00000598355 KCTD21Q4G0X4 260 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 OLFML2AQ68BL7 652 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 ZNF773Q6PK81 442 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 BRICD5Q6PL45 260 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 SHISA2Q6UWI4 295 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 SLC16A12Q6ZSM3 486 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 OR9G1Q8NH87 305 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 KCNG3Q8TAE7 436 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 FAM46BQ96A09 425 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 CYYR1Q96J86 154 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 TMEM59Q9BXS4 323 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 KCNK15Q9H427 330 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 RANBP3Q9H6Z4 567 aaPredicted RBP13□□□□□ -0.33
TRIM28-213ENST00000598355 RAB18Q9NP72 206 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 MBNL3Q9NUK0 354 aaKnown RBP13□□□□□ -0.33
TRIM28-213ENST00000598355 DPM3Q9P2X0 92 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 FBLN5Q9UBX5 448 aa13□□□□□ -0.33
TRIM28-213ENST00000598355 TRAV39A0A0B4J263 110 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 A6NDX4 124 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 BUB1B-PAK6H3BSN5 160 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 AIPO00170 330 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 F2RL2O00254 374 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 CCRL2O00421 344 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 MPIG6BO95866 241 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 GZMHP20718 246 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 OR10K2Q6IF99 312 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 CCBE1Q6UXH8 406 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-213ENST00000598355 OR2W3Q7Z3T1 314 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 OR52M1Q8NGK5 317 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 NDNFQ8TB73 568 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 CREB3L1Q96BA8 519 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 MMP28Q9H239 520 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 ETAA1Q9NY74 926 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 AK6Q9Y3D8 172 aaKnown RBP12.99□□□□□ -0.33
TRIM28-213ENST00000598355 PEX16Q9Y5Y5 336 aa12.99□□□□□ -0.33
TRIM28-213ENST00000598355 A0A0A6YYD4 124 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 FOXI3A8MTJ6 420 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-213ENST00000598355 OOSP1A8MZH6 123 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 HAX1O00165 279 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 LDLRAD4O15165 306 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 JUNBP17275 347 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-213ENST00000598355 LOXL3P58215 753 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 FAM189A2Q15884 450 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 LY6EQ16553 131 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 TMEM30BQ3MIR4 351 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 Q3ZCU0 254 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 ZNF554Q86TJ5 538 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 FAM89BQ8N5H3 189 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 C8orf31Q8N9H6 132 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 NEK7Q8TDX7 302 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 NICN1Q9BSH3 213 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 LPAR5Q9H1C0 372 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 PITPNC1Q9UKF7 332 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 PSG11Q9UQ72 335 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 HILPDAQ9Y5L2 63 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 WNK1Q9H4A3 2382 aa12.98□□□□□ -0.33
TRIM28-213ENST00000598355 LEUTXA8MZ59 168 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 C12orf77C9JDV5 145 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 J3QR06 171 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 NFYBP25208 207 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 FGF9P31371 208 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-213ENST00000598355 PLA1AQ53H76 456 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 TPTE2P1Q5T6R2 138 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 SYT6Q5T7P8 510 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-213ENST00000598355 TRAT1Q6PIZ9 186 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 LINC00311Q8N616 119 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 RFESDQ8TAC1 157 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 CITED1Q99966 193 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 SULT4A1Q9BR01 284 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 PLGRKTQ9HBL7 147 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 RNF114Q9Y508 228 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 V9GY05 133 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 MGAM2Q2M2H8 2515 aa12.97□□□□□ -0.33
TRIM28-213ENST00000598355 ARSBP15848 533 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 PSMB9P28065 219 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 CEACAM3P40198 252 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 KIR2DS4P43632 304 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 RAB13P51153 203 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 PSMD7P51665 324 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 PRRX1P54821 245 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms