RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LPAR4Q99677 370 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 ZFYVE21Q9BQ24 234 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 MACROD1Q9BQ69 325 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 RSRP1Q9BUV0 290 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 MRPL37Q9BZE1 423 aaKnown RBP3.56□□□□□ -1.84
LIG3-211ENST00000588713 OR11A1Q9GZK7 315 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 ZNF700Q9H0M5 742 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 NELFAQ9H3P2 528 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 METTL8Q9H825 291 aaKnown RBP3.56□□□□□ -1.84
LIG3-211ENST00000588713 DOK5Q9P104 306 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 PRODH2Q9UF12 536 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 CGGBP1Q9UFW8 167 aaPredicted RBP3.56□□□□□ -1.84
LIG3-211ENST00000588713 B3GALT5Q9Y2C3 310 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 KCNIP3Q9Y2W7 256 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 NSG2Q9Y328 171 aa3.56□□□□□ -1.84
LIG3-211ENST00000588713 RAI1Q7Z5J4 1906 aaPredicted RBP3.56□□□□□ -1.84
LIG3-211ENST00000588713 DNAJC13O75165 2243 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 TRAV36DV7A0A075B6V5 113 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 LOC100509620A0A075B734 347 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 A0A0A6YYC8 382 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 LCE6AA0A183 80 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 SMCO3A2RU48 225 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 PRSS37A4D1T9 235 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 PINLYPA6NC86 204 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 CRYM-AS1A6NIL9 109 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 A6NIZ1 184 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 G3V4G9 280 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 H7C1C5 153 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 I3L1I5 382 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 OVOL3O00110 214 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 EREGO14944 169 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BKO60814 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 PITX3O75364 302 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 YIF1AO95070 293 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 OR6A2O95222 327 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 PNPP00491 289 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 IFNA21P01568 189 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HBE1P02100 147 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 PMP2P02689 132 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HSPB1P04792 205 aaKnown RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 ARG1P05089 322 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BJP06899 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 CTSDP07339 412 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 CELA3AP09093 270 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 RD3LP0DJH9 198 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HPGDP15428 266 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 SLC25A16P16260 332 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 NDUFB7P17568 137 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 AMY2BP19961 511 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 FBLP22087 321 aaKnown RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BOP23527 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 GABRR1P24046 479 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 LOXP28300 417 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 CEACAM8P31997 349 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BBP33778 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 GALNSP34059 522 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 OPRM1P35372 400 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 MAGEA5P43359 124 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 GABRA4P48169 554 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 RND2P52198 227 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 ZNF133P52736 654 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 NDUFA6P56556 154 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BDP58876 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HILS1P60008 231 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 RAP1BP61224 184 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 RPL27P61353 136 aaKnown RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 LSM6P62312 80 aaKnown RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 LCN6P62502 163 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST1H2BCP62807 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 H3F3AP84243 136 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 NHLH2Q02577 135 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 GLO1Q04760 184 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 SPOCK1Q08629 439 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 GAMTQ14353 236 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 ZNF266Q14584 549 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 JOSD1Q15040 202 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 ELOBQ15370 118 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 UBE2V2Q15819 145 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST2H2BEQ16778 126 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 PCK2Q16822 640 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 IAH1Q2TAA2 248 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 TMEM176BQ3YBM2 270 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 COA6Q5JTJ3 125 aaKnown RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 SOHLH1Q5JUK2 328 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 ZNF506Q5JVG8 444 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.55□□□□□ -1.84
LIG3-211ENST00000588713 AADACL3Q5VUY0 350 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 C1orf140Q5VVS0 124 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 OR2A2Q6IF42 318 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 CDPF1Q6NVV7 123 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 SGPP2Q8IWX5 399 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 TMEM183AQ8IXX5 376 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 TMEM156Q8N614 296 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 ARL6IP6Q8N6S5 226 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 C10orf53Q8N6V4 93 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 CSNK1A1LQ8N752 337 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 GVQW1Q8N7I0 195 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 ZNF611Q8N823 705 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 ZNF615Q8N8J6 731 aa3.55□□□□□ -1.84
LIG3-211ENST00000588713 LRTM2Q8N967 370 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms