RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AMBNQ9NP70 447 aa16.59■□□□□ 0.25
VPS53-216ENST00000574029 LINC01548A6NM66 108 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 E9PI62 339 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 HSD17B6O14756 317 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 RAB3AP20336 220 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 MRPL28Q13084 256 aaKnown RBP16.58■□□□□ 0.24
VPS53-216ENST00000574029 Q8N6K4 173 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 TSEN15Q8WW01 171 aaKnown RBP16.58■□□□□ 0.24
VPS53-216ENST00000574029 NRG4Q8WWG1 115 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 RAX2Q96IS3 184 aa16.58■□□□□ 0.24
VPS53-216ENST00000574029 EAF1Q96JC9 268 aaPredicted RBP16.58■□□□□ 0.24
VPS53-216ENST00000574029 TRAV39A0A0B4J263 110 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 IGHV1-3A0A0C4DH29 117 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 A0A1W2PPE3 182 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 GAPDHP04406 335 aaKnown RBP16.57■□□□□ 0.24
VPS53-216ENST00000574029 GP2P55259 537 aaKnown RBP16.57■□□□□ 0.24
VPS53-216ENST00000574029 RSU1Q15404 277 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 SMN1Q16637 294 aaKnown RBP16.57■□□□□ 0.24
VPS53-216ENST00000574029 TEX38Q6PEX7 206 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 TGIF2LXQ8IUE1 241 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 IZUMO1Q8IYV9 350 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 SUMF2Q8NBJ7 301 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 OR51A2Q8NGJ7 313 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 OR10K1Q8NGX5 313 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 TFAP2CQ92754 450 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 DUX3Q96PT4 197 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 GPER1Q99527 375 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 DPCDQ9BVM2 203 aaPredicted RBP16.57■□□□□ 0.24
VPS53-216ENST00000574029 JAM3Q9BX67 310 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 IFT22Q9H7X7 185 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 FGF20Q9NP95 211 aaPredicted RBP16.57■□□□□ 0.24
VPS53-216ENST00000574029 ERVK13-1Q9NX77 482 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 ZNF581Q9P0T4 197 aa16.57■□□□□ 0.24
VPS53-216ENST00000574029 CCL24O00175 119 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 AP4M1O00189 453 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 CCRL2O00421 344 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 MAGEB3O15480 346 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 RAMP3O60896 148 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 GPR12P47775 334 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 RIPK1Q13546 671 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 MOB3BQ86TA1 216 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 SATL1Q86VE3 508 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 OR52I1Q8NGK6 324 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 FBLIM1Q8WUP2 373 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 ABCG5Q9H222 651 aa16.56■□□□□ 0.24
VPS53-216ENST00000574029 LIN7CQ9NUP9 197 aaKnown RBP16.56■□□□□ 0.24
VPS53-216ENST00000574029 HTR3BO95264 441 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 RPLP1P05386 114 aaKnown RBP16.55■□□□□ 0.24
VPS53-216ENST00000574029 NHLRC4P0CG21 123 aaPredicted RBP16.55■□□□□ 0.24
VPS53-216ENST00000574029 GZMHP20718 246 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 REG1BP48304 166 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 PNLIPRP3Q17RR3 467 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 NHLRC3Q5JS37 347 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 C8orf59Q8N0T1 100 aaPredicted RBP16.55■□□□□ 0.24
VPS53-216ENST00000574029 LINC00311Q8N616 119 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 C8orf31Q8N9H6 132 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 Q8N9W7 124 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 OR52M1Q8NGK5 317 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 OR2T10Q8NGZ9 312 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 FAM192AQ9GZU8 254 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 TAS2R4Q9NYW5 299 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 ST3GAL6Q9Y274 331 aa16.55■□□□□ 0.24
VPS53-216ENST00000574029 IGHV3-72A0A0B4J1Y9 119 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 IRGMA1A4Y4 181 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 NCBP2LA6PVI3 153 aaKnown RBP16.54■□□□□ 0.24
VPS53-216ENST00000574029 C15orf65H3BRN8 121 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 GNAO1P09471 354 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 GBX2P52951 348 aaPredicted RBP16.54■□□□□ 0.24
VPS53-216ENST00000574029 RNF152Q8N8N0 203 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 RGP1Q92546 391 aaPredicted RBP16.54■□□□□ 0.24
VPS53-216ENST00000574029 GON7Q9BXV9 100 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 IL36GQ9NZH8 169 aa16.54■□□□□ 0.24
VPS53-216ENST00000574029 LSM4Q9Y4Z0 139 aaKnown RBP16.54■□□□□ 0.24
VPS53-216ENST00000574029 TMEM30CPA0ZSE6 113 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 CDRT1O95170 752 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 DCKP27707 260 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 CDX1P47902 265 aaPredicted RBP16.53■□□□□ 0.24
VPS53-216ENST00000574029 SOX2P48431 317 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 RBM11P57052 281 aaKnown RBP16.53■□□□□ 0.24
VPS53-216ENST00000574029 KIR2DS1Q14954 304 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 TMEM104Q8NE00 496 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 OR8U1Q8NH10 309 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 ST6GALNAC6Q969X2 333 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 PLSCR3Q9NRY6 295 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 RYR3Q15413 4870 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 TENM3Q9P273 2699 aa16.53■□□□□ 0.24
VPS53-216ENST00000574029 SDCBPO00560 298 aaPredicted RBP16.52■□□□□ 0.24
VPS53-216ENST00000574029 OR7C1O76099 320 aaPredicted RBP16.52■□□□□ 0.24
VPS53-216ENST00000574029 CD1BP29016 333 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 LUMP51884 338 aaPredicted RBP16.52■□□□□ 0.24
VPS53-216ENST00000574029 GTF2A1P52655 376 aaPredicted RBP16.52■□□□□ 0.24
VPS53-216ENST00000574029 RAB25P57735 213 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 FOXE3Q13461 319 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 GPR50Q13585 617 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 CXorf66Q5JRM2 361 aaPredicted RBP16.52■□□□□ 0.24
VPS53-216ENST00000574029 LAIR2Q6ISS4 152 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 LCNL1Q6ZST4 164 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 LINC00596Q86U02 117 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 OR5M8Q8NGP6 311 aa16.52■□□□□ 0.24
VPS53-216ENST00000574029 OR52N1Q8NH53 320 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms