RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 YRDCQ86U90 279 aaKnown RBP9.77□□□□□ -0.85
CUX1-218ENST00000560541 ZNF100Q8IYN0 542 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 LYPD6BQ8NI32 183 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 TP53RKQ96S44 253 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 ABHD14AQ9BUJ0 271 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 P4HTMQ9NXG6 502 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 NSG1A0A0A6YYJ2 146 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 DVL1O14640 695 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 OR7C1O76099 320 aaPredicted RBP9.77□□□□□ -0.85
CUX1-218ENST00000560541 IGHV3-9P01782 118 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 LIFP15018 202 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 SPINK2P20155 84 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 AADACP22760 399 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 P2RY1P47900 373 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 RAB7AP51149 207 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 HMGN3Q15651 99 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 LYG1Q8N1E2 194 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 PIGCQ92535 297 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 SPSB1Q96BD6 273 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 RARRES2Q99969 163 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 SCRT1Q9BWW7 348 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 MAGT1Q9H0U3 335 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 ZNF442Q9H7R0 627 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 DECR2Q9NUI1 292 aa9.77□□□□□ -0.85
CUX1-218ENST00000560541 FOXD3Q9UJU5 478 aaPredicted RBP9.77□□□□□ -0.85
CUX1-218ENST00000560541 PTRH2Q9Y3E5 179 aaKnown RBP9.77□□□□□ -0.85
CUX1-218ENST00000560541 COL6A3P12111 3177 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 FAM24AA6NFZ4 105 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 GPR137BO60478 399 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 NRASP01111 189 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 CHRNB4P30926 498 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 HIST1H3AP68431 136 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 SLC24A4Q8NFF2 622 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 FGFBP3Q8TAT2 258 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 WFDC12Q8WWY7 111 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 DNASE2BQ8WZ79 361 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 MSI2Q96DH6 328 aaKnown RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 ALKBH7Q9BT30 221 aaPredicted RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 PROK2Q9HC23 129 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 SEPSECSQ9HD40 501 aaKnown RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 POMT1Q9Y6A1 747 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 A0A0G2JMM0 328 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 A0A1W2PPB8 328 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 A0A1W2PRS3 328 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 ZNF705FA8MVS1 300 aaPredicted RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 KIR3DP1A8MWS1 328 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 HSPB6O14558 160 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 ST8SIA3O43173 380 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 SYNGR3O43761 229 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 SEC11BP0C7V7 166 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 ZNF705DP0CH99 300 aaPredicted RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 ZNF705BP0CI00 300 aaPredicted RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 CRYGSP22914 178 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 DUSP1P28562 367 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 FAM27BQ5VT28 67 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 MRPL14Q6P1L8 145 aaKnown RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 MRPL41Q8IXM3 137 aaKnown RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 OSR2Q8N2R0 312 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 OR1F12Q8NHA8 337 aa9.76□□□□□ -0.85
CUX1-218ENST00000560541 PHF7Q9BWX1 381 aaPredicted RBP9.76□□□□□ -0.85
CUX1-218ENST00000560541 LY6G6EA0A0G2JKS1 128 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 NKX2-6A6NCS4 301 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 NPBWR2P48146 333 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 HERV-K104P61576 105 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 ZNF92Q03936 586 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 ELOBQ15370 118 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 CNN3Q15417 329 aaKnown RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 PLCXD3Q63HM9 321 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 C18orf12Q96KH6 178 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 PCED1AQ9H1Q7 454 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 U3KQA8 63 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 NKX6-3A6NJ46 265 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 CCL20P78556 96 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 SPIN3Q5JUX0 258 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 TMPRSS7Q7RTY8 843 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 CALHM1Q8IU99 346 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 LGI3Q8N145 548 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 ZFP62Q8NB50 900 aaPredicted RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 GINS3Q9BRX5 216 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 OR2J1Q9GZK6 312 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 ARV1Q9H2C2 271 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 GSX1Q9H4S2 264 aaPredicted RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 ZNF286AQ9HBT8 521 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 FREM1Q5H8C1 2179 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 ZNF320A2RRD8 509 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 GGCTO75223 188 aaKnown RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 GOSR1O95249 250 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 EPHA1P21709 976 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 DTYMKP23919 212 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 BMI1P35226 326 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 DSCR4P56555 118 aaPredicted RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 MRPS34P82930 218 aaKnown RBP9.75□□□□□ -0.85
CUX1-218ENST00000560541 RAB35Q15286 201 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 SOHLH1Q5JUK2 328 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 FOXL2NBQ6ZUU3 175 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 C17orf78Q8N4C9 275 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 DOCK7Q96N67 2140 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 YPEL4Q96NS1 127 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 SYT3Q9BQG1 590 aa9.75□□□□□ -0.85
CUX1-218ENST00000560541 RBM7Q9Y580 266 aaKnown RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms