RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SIRPB1O00241 398 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 CCRL2O00421 344 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 ATP6V1G2O95670 118 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 OR2H2O95918 312 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 IGKV1D-12P01611 117 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 CSN2P05814 226 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 CALCBP10092 127 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 TMEM11P17152 192 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 PRKACBP22694 351 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 ATP1B3P54709 279 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 RPS11P62280 158 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP28-212ENST00000544750 RIPK1Q13546 671 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 EBI3Q14213 229 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 DIAPH2-AS1Q14236 149 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 RBM39Q14498 530 aaKnown RBP10.03□□□□□ -0.8
USP28-212ENST00000544750 PNLIPRP3Q17RR3 467 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 C6orf141Q5SZD1 244 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 LHFPL2Q6ZUX7 228 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 FOXRED2Q8IWF2 684 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 ZFP41Q8N8Y5 198 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 OR4D6Q8NGJ1 314 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 OR51A2Q8NGJ7 313 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 OR13C5Q8NGS8 318 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 OR9G1Q8NH87 305 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 TOMM40LQ969M1 308 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 RFT1Q96AA3 541 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 RPEQ96AT9 228 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 KIRREL1Q96J84 757 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 CITED4Q96RK1 184 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 ANKRD60Q9BZ19 345 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 HMG20AQ9NP66 347 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 GLS2Q9UI32 602 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 DHDHQ9UQ10 334 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 TRBV5-5A0A0J9YX44 114 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 FUOMA2VDF0 154 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 J3QR06 171 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 SULT1B1O43704 296 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 CDK1P06493 297 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 RPSAP08865 295 aaKnown RBP10.02□□□□□ -0.81
USP28-212ENST00000544750 PRKACAP17612 351 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 MYF6P23409 242 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 PTGFRP43088 359 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 SOX2P48431 317 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 POU3F4P49335 361 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 SNU13P55769 128 aaKnown RBP10.02□□□□□ -0.81
USP28-212ENST00000544750 MTCP1P56278 107 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 ZP1P60852 638 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 CFHR3Q02985 330 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 PDZK1IP1Q13113 114 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 FOXE3Q13461 319 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 IZUMO2Q6UXV1 221 aa10.02□□□□□ -0.81
USP28-212ENST00000544750 TSEN15Q8WW01 171 aaKnown RBP10.02□□□□□ -0.81
USP28-212ENST00000544750 AP4M1O00189 453 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 SH2D1BO14796 132 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 IGKV1D-33P01593 117 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 IGKV1-33P01594 117 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 ELANEP08246 267 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 GPR12P47775 334 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 WNT4P56705 351 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 MED21Q13503 144 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 GPR50Q13585 617 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 HES1Q14469 280 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 HNF4GQ14541 408 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 ZNF260Q3ZCT1 412 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 CXorf66Q5JRM2 361 aaPredicted RBP10.01□□□□□ -0.81
USP28-212ENST00000544750 RNLSQ5VYX0 342 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 Q6P435 159 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 SERPINA12Q8IW75 414 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 OR8H3Q8N146 312 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 STX19Q8N4C7 294 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 Q8N6K4 173 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 NANOGP1Q8N7R0 232 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 OR5D18Q8NGL1 313 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 OR5D14Q8NGL3 314 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 GPR148Q8TDV2 347 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 GHSRQ92847 366 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 TMEM106AQ96A25 262 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 ORAI1Q96D31 301 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 ABCG5Q9H222 651 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 LINC00574Q9H8X3 128 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 EXOSC4Q9NPD3 245 aaKnown RBP10.01□□□□□ -0.81
USP28-212ENST00000544750 TAS2R4Q9NYW5 299 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 GSTK1Q9Y2Q3 226 aa10.01□□□□□ -0.81
USP28-212ENST00000544750 LSM2Q9Y333 95 aaKnown RBP10.01□□□□□ -0.81
USP28-212ENST00000544750 AMMECR1Q9Y4X0 333 aaPredicted RBP10.01□□□□□ -0.81
USP28-212ENST00000544750 KBTBD11-OT1A0A1B0GTJ5 212 aa10□□□□□ -0.81
USP28-212ENST00000544750 KDM4BO94953 1096 aa10□□□□□ -0.81
USP28-212ENST00000544750 RAB7AP51149 207 aa10□□□□□ -0.81
USP28-212ENST00000544750 INSL3P51460 131 aa10□□□□□ -0.81
USP28-212ENST00000544750 IRF3Q14653 427 aa10□□□□□ -0.81
USP28-212ENST00000544750 KISS1Q15726 138 aa10□□□□□ -0.81
USP28-212ENST00000544750 ASPHD1Q5U4P2 390 aa10□□□□□ -0.81
USP28-212ENST00000544750 TGIF2LXQ8IUE1 241 aa10□□□□□ -0.81
USP28-212ENST00000544750 MYOZ3Q8TDC0 251 aa10□□□□□ -0.81
USP28-212ENST00000544750 C4orf3Q8WVX3 66 aa10□□□□□ -0.81
USP28-212ENST00000544750 PPIL3Q9H2H8 161 aaKnown RBP10□□□□□ -0.81
USP28-212ENST00000544750 VCX3BQ9H321 246 aa10□□□□□ -0.81
USP28-212ENST00000544750 EDA2RQ9HAV5 297 aa10□□□□□ -0.81
USP28-212ENST00000544750 PALMDQ9NP74 551 aa10□□□□□ -0.81
USP28-212ENST00000544750 LIN7CQ9NUP9 197 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms