RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 RAB11AP62491 216 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 PMPCAQ10713 525 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 SOHLH1Q5JUK2 328 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 TPTE2P1Q5T6R2 138 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 PRR27Q6MZM9 219 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 TCF24Q7RTU0 167 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 TRAPPC6BQ86SZ2 158 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 MRPL41Q8IXM3 137 aaKnown RBP6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 C1orf87Q8N0U7 546 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 PNLDC1Q8NA58 520 aaKnown RBP6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 CT55Q8WUE5 264 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 SLC35E1Q96K37 410 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 TECTBQ96PL2 329 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 NICN1Q9BSH3 213 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 NELFAQ9H3P2 528 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 ZNF552Q9H707 407 aaPredicted RBP6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 HDGFL3Q9Y3E1 203 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 RFNGQ9Y644 331 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 IGLV1-36A0A0B4J1U3 117 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 PRSS37A4D1T9 235 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 LIPT2A6NK58 231 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 DUS4LO95620 317 aaKnown RBP6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 SNCAP37840 140 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 GPR12P47775 334 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 CSNK1A1P48729 337 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 RPS20P60866 119 aaKnown RBP6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 CARD17Q5XLA6 110 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 PRSS54Q6PEW0 395 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 CALHM1Q8IU99 346 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 NMES1Q9C002 83 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 ZNF160Q9HCG1 818 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 AURKAIP1Q9NWT8 199 aaPredicted RBP6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 SLC2A8Q9NY64 477 aa6.93□□□□□ -1.3
PDLIM5-221ENST00000542407 WDR87Q6ZQQ6 2873 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 NPIPB13A6NJU9 1138 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 NPIPB4C9JG80 1138 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 E5RGE8 158 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 M0QXV9 152 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 UPK3AO75631 287 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 MMP23AO75900 390 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 PPIAL4GP0DN37 164 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CX3CR1P49238 355 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CYB561P49447 251 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 FAM3AP98173 230 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 COX19Q49B96 90 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 ZNF562Q6V9R5 426 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SUMF2Q8NBJ7 301 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SUMF1Q8NBK3 374 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 OR6N2Q8NGY6 317 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 RNASEH2CQ8TDP1 164 aaKnown RBP6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 Q8WTZ3 238 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 GALNT14Q96FL9 552 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SFRP2Q96HF1 295 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SLC35B3Q9H1N7 401 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CNTD2Q9H8S5 307 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 WDR76Q9H967 626 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 PLEKHJ1Q9NW61 149 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 TRBV6-7A0A0A0MS04 114 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 DFFBO76075 338 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 RENP00797 406 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 OR10J4P0C629 311 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 TRGC1P0CF51 173 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CCL3P10147 92 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CD37P11049 281 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CSRP1P21291 193 aaKnown RBP6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 CHATP28329 748 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SLC6A9P48067 706 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 ATP5IP56385 69 aaPredicted RBP6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 RAB1AP62820 205 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SSBP1Q04837 148 aaKnown RBP6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 AESQ08117 197 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 FBLN7Q53RD9 439 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 C1orf194Q5T5A4 169 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 H1FOOQ8IZA3 346 aaPredicted RBP6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 ASB10Q8WXI3 467 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 DDIT4LQ96D03 193 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 OR10C1Q96KK4 312 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 SNX22Q96L94 193 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 STRADBQ9C0K7 418 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 PLEKHA2Q9HB19 425 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 G6PC2Q9NQR9 355 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 B9D1Q9UPM9 204 aa6.92□□□□□ -1.3
PDLIM5-221ENST00000542407 NSG1A0A0A6YYJ2 146 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 TRBV5-5A0A0J9YX44 114 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 CORTO00230 105 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 DLL1O00548 723 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 SLC17A2O00624 439 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 WDR1O75083 606 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 NDUFB8O95169 186 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 TSPAN13O95857 204 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 GCGP01275 180 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 CTLA4P16410 223 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 UBE2KP61086 200 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 TEX38Q6PEX7 206 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 H1FNTQ75WM6 255 aaPredicted RBP6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 COMMD2Q86X83 199 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 MUCL1Q96DR8 90 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 AMELYQ99218 206 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 HIST1H2BLQ99880 126 aa6.91□□□□□ -1.3
PDLIM5-221ENST00000542407 RARRES2Q99969 163 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 157.9 ms