RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 NKAPLQ5M9Q1 402 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 OR10K2Q6IF99 312 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 OR2W3Q7Z3T1 314 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 OR10A7Q8NGE5 316 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 AJUBAQ96IF1 538 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 KIRREL1Q96J84 757 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 NEDD4LQ96PU5 975 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 GFI1Q99684 422 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 SSX3Q99909 188 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 URM1Q9BTM9 101 aaKnown RBP9.29□□□□□ -0.92
COL28A1-203ENST00000435823 RAB9BQ9NP90 201 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 ABCB10Q9NRK6 738 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 IDI2-AS1Q9NZ38 188 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 STUB1Q9UNE7 303 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 SSR3Q9UNL2 185 aa9.29□□□□□ -0.92
COL28A1-203ENST00000435823 A0A087X0M5 115 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 TRAV39A0A0B4J263 110 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 A0A1B0GX30 115 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 FAM172BPA6NC97 362 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 TMEM14DPA8MWL7 114 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 TNFAIP8O95379 198 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 MT-ND4P03905 459 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 LORP23490 312 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-203ENST00000435823 CD34P28906 385 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 SSTR5P35346 364 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 GDNFP39905 211 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 PRRX1P54821 245 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 RAG2P55895 527 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 NEDD8Q15843 81 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 FAM189A2Q15884 450 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 SSX2Q16385 188 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 AWAT1Q58HT5 328 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 DHRS7BQ6IAN0 325 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-203ENST00000435823 C22orf42Q6IC83 251 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 ZNF497Q6ZNH5 498 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 C3orf56Q8N813 242 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 OR4F5Q8NH21 305 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 OR9G1Q8NH87 305 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 CCDC107Q8WV48 283 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 CREB3L1Q96BA8 519 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 TM2D1Q9BX74 207 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 LINC00574Q9H8X3 128 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 VCX3AQ9NNX9 186 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 TRAPPC2LQ9UL33 140 aa9.28□□□□□ -0.92
COL28A1-203ENST00000435823 STAB1Q9NY15 2570 aa9.27□□□□□ -0.92
COL28A1-203ENST00000435823 A0A087WXM4 84 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 UBE2QL1A1L167 161 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 LEUTXA8MZ59 168 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 NPIPB11E5RHQ5 1161 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 ORC5O43913 435 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 RAB3BP20337 219 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 PAX6P26367 422 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 FGF9P31371 208 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-203ENST00000435823 CEACAM3P40198 252 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 ARHGDIBP52566 201 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 CLDN12P56749 244 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 QRFPP83859 136 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 UNC119Q13432 240 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 LY6EQ16553 131 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 LTC4SQ16873 150 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 PLA1AQ53H76 456 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 C6orf183Q5T699 404 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 SYT6Q5T7P8 510 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-203ENST00000435823 HES5Q5TA89 166 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 SIGIRRQ6IA17 410 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 TRAT1Q6PIZ9 186 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 BAIAP2L2Q6UXY1 529 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 SLC16A12Q6ZSM3 486 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 OR51D1Q8NGF3 324 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 OR4P4Q8NGL7 312 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 RFESDQ8TAC1 157 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 ARL11Q969Q4 196 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 FAM3DQ96BQ1 224 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 NICN1Q9BSH3 213 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 KCNK15Q9H427 330 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 BEX1Q9HBH7 125 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 ZNF286AQ9HBT8 521 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 RAB18Q9NP72 206 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 TXNL4BQ9NX01 149 aaKnown RBP9.27□□□□□ -0.93
COL28A1-203ENST00000435823 C1RLQ9NZP8 487 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 DPM3Q9P2X0 92 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 STEAP1Q9UHE8 339 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 AMMECR1Q9Y4X0 333 aaPredicted RBP9.27□□□□□ -0.93
COL28A1-203ENST00000435823 HILPDAQ9Y5L2 63 aa9.27□□□□□ -0.93
COL28A1-203ENST00000435823 A0A1B0GUS0 222 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 VGLL3A8MV65 326 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 SPINT2O43291 252 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 NDUFA7O95182 113 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 IGLV1-47P01700 117 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 CHATP28329 748 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 BLVRBP30043 206 aaPredicted RBP9.26□□□□□ -0.93
COL28A1-203ENST00000435823 HLA-DRB5Q30154 266 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 DYNAPQ8N1N2 210 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 TSPAN14Q8NG11 270 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 OR4K15Q8NH41 348 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 TAF15Q92804 592 aaKnown RBP eCLIP9.26□□□□□ -0.93
COL28A1-203ENST00000435823 LPAR5Q9H1C0 372 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 MMP28Q9H239 520 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 KCNIP1Q9NZI2 227 aa9.26□□□□□ -0.93
COL28A1-203ENST00000435823 SHISA3A0PJX4 238 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms