RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ZNF286AQ9HBT8 521 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 VCX3AQ9NNX9 186 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 STEAP1Q9UHE8 339 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 TRAPPC2LQ9UL33 140 aa15.14■□□□□ 0.01
SHH-203ENST00000435425 TBL2Q9Y4P3 447 aaKnown RBP15.14■□□□□ 0.01
SHH-203ENST00000435425 FAM181BA6NEQ2 426 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 H3BUX3 64 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 TOR1AO14656 332 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 IL1AP01583 271 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 CRYBA1P05813 215 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 BLVRBP30043 206 aaPredicted RBP15.13■□□□□ 0.01
SHH-203ENST00000435425 FGF9P31371 208 aaPredicted RBP15.13■□□□□ 0.01
SHH-203ENST00000435425 FAM189A2Q15884 450 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 SSX2Q16385 188 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 LDLRAD2Q5SZI1 272 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 UTF1Q5T230 341 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 C6orf201Q7Z4U5 140 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 DYNAPQ8N1N2 210 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 LEAP2Q969E1 77 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 ARL11Q969Q4 196 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 KIRREL1Q96J84 757 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 URM1Q9BTM9 101 aaKnown RBP15.13■□□□□ 0.01
SHH-203ENST00000435425 FAAP24Q9BTP7 215 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 TM2D1Q9BX74 207 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 LPAR5Q9H1C0 372 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 MEGF9Q9H1U4 602 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 RNF167Q9H6Y7 350 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 HILPDAQ9Y5L2 63 aa15.13■□□□□ 0.01
SHH-203ENST00000435425 A0A0A6YYD4 124 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 A0A0B4J203 849 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 TMEM89A2RUT3 159 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 IFITM5A6NNB3 132 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 H3BUI4 141 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 SOCS1O15524 211 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 GZMHP20718 246 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 CHATP28329 748 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 PLA2G7Q13093 441 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 LY6EQ16553 131 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 LRRC75BQ2VPJ9 315 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 C12orf54Q6X4T0 127 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 RTN4RL2Q86UN3 420 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 SULT4A1Q9BR01 284 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 ZNF696Q9H7X3 374 aa15.12■□□□□ 0.01
SHH-203ENST00000435425 COL6A5A8TX70 2615 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 TMEM272A0A1B0GTI8 110 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 GPR137BO60478 399 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 GLAP06280 429 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 HKR1P10072 659 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 SLC2A2P11168 524 aaPredicted RBP15.11■□□□□ 0.01
SHH-203ENST00000435425 HTR1DP28221 377 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 RANBP1P43487 201 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 VEGFCP49767 419 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 GNG10P50151 68 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 PRRX1P54821 245 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 MXD1Q05195 221 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 NR2C2APQ86WQ0 139 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 PRR18Q8N4B5 295 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 ZNF596Q8TC21 504 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 MALSU1Q96EH3 234 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 KCTD7Q96MP8 289 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 PLEKHJ1Q9NW61 149 aa15.11■□□□□ 0.01
SHH-203ENST00000435425 IGHV3-43A0A0B4J1X8 118 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 NPIPB11E5RHQ5 1161 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 IGHV3-43DP0DP04 118 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 JUNBP17275 347 aaPredicted RBP15.1■□□□□ 0.01
SHH-203ENST00000435425 SDC2P34741 201 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 RAB13P51153 203 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 MINOS1Q5TGZ0 78 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 OR4P4Q8NGL7 312 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 OR5R1Q8NH85 324 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 CENPOQ9BU64 300 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 LIN7BQ9HAP6 207 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 VPREB3Q9UKI3 123 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 MINOS1-NBL1R4GNA1 71 aa15.1■□□□□ 0.01
SHH-203ENST00000435425 A0A1W2PPE3 182 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 C15orf65H3BRN8 121 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 SDCBPO00560 298 aaPredicted RBP15.09■□□□□ 0.01
SHH-203ENST00000435425 ORC5O43913 435 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 CA11O75493 328 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 CLEC2LP0C7M8 214 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 RCC1P18754 421 aaPredicted RBP15.09■□□□□ 0.01
SHH-203ENST00000435425 CD34P28906 385 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 C6orf183Q5T699 404 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 C5orf24Q7Z6I8 188 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 TPRA1Q86W33 373 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 OR9G1Q8NH87 305 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 MRPL30Q8TCC3 161 aaKnown RBP15.09■□□□□ 0.01
SHH-203ENST00000435425 CHMP1AQ9HD42 196 aaPredicted RBP15.09■□□□□ 0.01
SHH-203ENST00000435425 ABCB10Q9NRK6 738 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 RAB22AQ9UL26 194 aa15.09■□□□□ 0.01
SHH-203ENST00000435425 A0A087X0M5 115 aa15.08■□□□□ 0
SHH-203ENST00000435425 A0A1B0GX30 115 aa15.08■□□□□ 0
SHH-203ENST00000435425 NOTOA8MTQ0 251 aa15.08■□□□□ 0
SHH-203ENST00000435425 C12orf77C9JDV5 145 aa15.08■□□□□ 0
SHH-203ENST00000435425 LDLRAD4O15165 306 aa15.08■□□□□ 0
SHH-203ENST00000435425 EFNB2P52799 333 aa15.08■□□□□ 0
SHH-203ENST00000435425 FOXL1Q12952 345 aa15.08■□□□□ 0
SHH-203ENST00000435425 HLA-DRB5Q30154 266 aa15.08■□□□□ 0
SHH-203ENST00000435425 FAM53AQ6NSI3 398 aaPredicted RBP15.08■□□□□ 0
SHH-203ENST00000435425 GDPGP1Q6ZNW5 385 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms