RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 A0A087X0T9 212 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GABARAPH6UMI1 98 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SLC17A2O00624 439 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 AGFG2O95081 481 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LINC00032P0C843 101 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CXCL2P19875 107 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MST1P26927 711 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MVDP53602 400 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PRSS8Q16651 343 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SLC18B1Q6NT16 456 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 EPGNQ6UW88 154 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 OXGR1Q96P68 337 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 OR2A14Q96R47 310 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 FGF21Q9NSA1 209 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MED31Q9Y3C7 131 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM269A0A1B0GVZ9 245 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 DUS4LO95620 317 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PTHP01270 115 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GPR183P32249 361 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PPP1CBP62140 327 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 OR7A5Q15622 319 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PMCHL1Q16048 86 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LYSMD4Q5XG99 296 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LCN10Q6JVE6 187 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 STPG4Q8N801 248 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF784Q8NCA9 323 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 OR10G7Q8NGN6 311 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 IRF7Q92985 503 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TEX101Q9BY14 249 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 NAT8BQ9UHF3 227 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TIMM13Q9Y5L4 95 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 USP24Q9UPU5 2620 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 EIF4G3O43432 1585 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TSC2P49815 1807 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 BRI3O95415 125 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 THY1P04216 161 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SLC6A1P30531 599 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SOX3P41225 446 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF626Q68DY1 528 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 INO80CQ6PI98 192 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 BTNL8Q6UX41 500 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SIGLEC10Q96LC7 697 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CLCF1Q9UBD9 225 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 NCAPD2Q15021 1401 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TRAV36DV7A0A075B6V5 113 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MPPED1O15442 326 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 NDUFS4O43181 175 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 RAMP1O60894 148 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 NMBP08949 121 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 POLR2LP62875 67 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 FZD5Q13467 585 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 Q56UQ5 140 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF429Q86V71 674 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CRIM1Q9NZV1 1036 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 JPT1Q9UK76 154 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CROCC2H7BZ55 1655 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LINC00694P0DN24 101 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PCOLCEQ15113 449 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GTSCR1Q86UQ5 136 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM86BQ8N661 226 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF433Q8N7K0 673 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SLCO4A1Q96BD0 722 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GPR82Q96P67 336 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A33Q9BSK2 321 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ZSWIM8A7E2V4 1837 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CRLF1O75462 422 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 POLR2IP36954 125 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CCL11P51671 97 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ASPHD1Q5U4P2 390 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LINC01551Q86U37 167 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BLQ99880 126 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 C1QTNF5Q9BXJ0 243 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 FGFBP2Q9BYJ0 223 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 NAA60Q9H7X0 242 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SPANXA1Q9NS26 97 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 NYNRINQ9P2P1 1898 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LAMA4Q16363 1823 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 IGHV2-70DA0A0C4DH43 119 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 PAX1P15863 534 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GATA3P23771 443 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 EFNA5P52803 228 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CLDN20P56880 219 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 FNDC7Q5VTL7 733 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 GSTO2Q9H4Y5 243 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 CXorf36Q9H7Y0 433 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF286AQ9HBT8 521 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 RCC2Q9P258 522 aaKnown RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 B9D1Q9UPM9 204 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ITSN2Q9NZM3 1697 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 KDM5DQ9BY66 1539 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 ABCC10Q5T3U5 1492 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 MDFIC2A0A1B0GVS7 189 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 WTIPA6NIX2 430 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TNFRSF11BO00300 401 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TNFSF11O14788 317 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 FOLR2P14207 255 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A43Q8WUT9 341 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-221ENST00000641996 TEX37Q96LM6 180 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 LAMC3Q9Y6N6 1575 aa3.12□□□□□ -1.91
SCN1A-221ENST00000641996 BCORL1Q5H9F3 1711 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms