RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 LOC102723996A0A087X1L8 192 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 A0A1B0GX30 115 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 GGTA1PQ4G0N0 100 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 SHISA5Q8N114 240 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 OR10G8Q8NGN5 311 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 OR1F12Q8NHA8 337 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 PMCHL2Q9BQD1 86 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 SLC25A2Q9BXI2 301 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 MS4A6AQ9H2W1 248 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 GPR35Q9HC97 309 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 FSCN3Q9NQT6 498 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 CLN8Q9UBY8 286 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 RGPD3A6NKT7 1758 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-212ENST00000636194 TOGARAM1Q9Y4F4 1720 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 SDHDO14521 159 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 RER1O15258 196 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 AKR7A2O43488 359 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 SELENOFO60613 162 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 SRSF6Q13247 344 aaKnown RBP5.37□□□□□ -1.55
SCN1A-212ENST00000636194 MARCH3Q86UD3 253 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 GSX2Q9BZM3 304 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 PARLQ9H300 379 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 DUSP21Q9H596 190 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 Q9N2K0 584 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 C20orf141Q9NUB4 165 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 EML5Q05BV3 1969 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 C2orf16Q68DN1 1984 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 C7orf66A4D0T2 115 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 C11orf94C9JXX5 98 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 IGHA1P01876 353 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 IGHA2P01877 340 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 SEMG1P04279 462 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 ERVFRD-1P60508 538 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 OR10D4PQ8NGN7 298 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 ABHD3Q8WU67 409 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 WDR34Q96EX3 536 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 MGST2Q99735 147 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 NRIP2Q9BQI9 281 aa5.37□□□□□ -1.55
SCN1A-212ENST00000636194 RBBP6Q7Z6E9 1792 aaKnown RBP5.37□□□□□ -1.55
SCN1A-212ENST00000636194 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 TRBV4-1A0A0J9YWV2 114 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 SNURFLB1AK76 121 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 BCL9O00512 1426 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 FCGR3BO75015 233 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF56Q15929 161 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR11G2Q8NGC1 345 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR5AN1Q8NGI8 311 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 MCHR2Q969V1 340 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 DUX5Q96PT3 197 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 LAT2Q9GZY6 243 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 IFNL4K9M1U5 179 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 GJB3O75712 270 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR10J1P30954 320 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 PSG9Q00887 426 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 TMEM215Q68D42 235 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 FAM222BQ8WU58 562 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 APOBEC3GQ9HC16 384 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 HIGD1AQ9Y241 93 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 COA3Q9Y2R0 106 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 A0A1B0GWA3 101 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 LILRA1O75019 489 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 CCR6P51684 374 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF121P58317 390 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF658BQ4V348 819 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR2V1Q8NHB1 315 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 NUDCD2Q8WVJ2 157 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 APOBEC4Q8WW27 367 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 SMIM19Q96E16 107 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF48Q96MX3 618 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 MAP1LC3B2A6NCE7 125 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 M0R082 166 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 NRG2O14511 850 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 PPM1DO15297 605 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 NGFP01138 241 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 LIPFP07098 398 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 CD22P20273 847 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 CDKN2AP42771 156 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 HLA-DRB5Q30154 266 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 LINC00596Q86U02 117 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 PTRH1Q86Y79 214 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 PIANPQ8IYJ0 282 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 P2RX4Q99571 388 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 CITED1Q99966 193 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 LINC00470Q9BZP3 86 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 MAP1LC3BQ9GZQ8 125 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 WSB1Q9Y6I7 421 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 KBTBD11-OT1A0A1B0GTJ5 212 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 FOXO6A8MYZ6 492 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 NDUFS8O00217 210 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 GLULP15104 373 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 CTF1Q16619 201 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 RPS27LQ71UM5 84 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 BAP18Q8IXM2 172 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR1K1Q8NGR3 316 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR51E1Q8TCB6 317 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 XIRP1Q702N8 1843 aaKnown RBP5.36□□□□□ -1.55
SCN1A-212ENST00000636194 GGTLC3B5MD39 225 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 B4GALT1P15291 398 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 ADAMTS17Q8TE56 1095 aa5.36□□□□□ -1.55
SCN1A-212ENST00000636194 OR2V2Q96R30 315 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms