RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 H3BMQ9 156 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 FUT3P21217 361 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 GUCA2AQ02747 115 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 RUSC1-AS1Q66K80 236 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 NCR3LG1Q68D85 454 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 HCP5Q6MZN7 132 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 SLC6A7Q99884 636 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 NICN1Q9BSH3 213 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 LPAR5Q9H1C0 372 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 OCEL1Q9H607 264 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 LIN7BQ9HAP6 207 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 PEX16Q9Y5Y5 336 aa13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 SOX21Q9Y651 276 aaPredicted RBP13.54□□□□□ -0.24
CCDC28A-202ENST00000611852 MEIKINA0A087WXM9 373 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 MCRIP1C9JLW8 97 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 H3BUI4 141 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 PDCD6O75340 191 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 GABARAPO95166 117 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 SLC2A2P11168 524 aaPredicted RBP13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 MXD1Q05195 221 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 RBM39Q14498 530 aaKnown RBP13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 SLC35E4Q6ICL7 350 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 ZNF782Q6ZMW2 699 aaPredicted RBP13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 NEK7Q8TDX7 302 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 CYYR1Q96J86 154 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 NAA50Q9GZZ1 169 aaKnown RBP13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 TAS2R3Q9NYW6 316 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 OR6C3Q9NZP0 311 aa13.53□□□□□ -0.24
CCDC28A-202ENST00000611852 A0A0A6YYD4 124 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A0B4J203 849 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 TMEM272A0A1B0GTI8 110 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 GLAP06280 429 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 CLEC2LP0C7M8 214 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 IGHV1-8P0DP01 117 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 CHATP28329 748 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 TGFBR1P36897 503 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 UBE2E1P51965 193 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 PLA2G7Q13093 441 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 SFXN4Q6P4A7 337 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 SLC16A12Q6ZSM3 486 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 PIP4P2Q8N4L2 257 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 FAM89BQ8N5H3 189 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 ZNF565Q8N9K5 539 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 OR13A1Q8NGR1 328 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 URM1Q9BTM9 101 aaKnown RBP13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 GAL3ST2Q9H3Q3 398 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 HEXA-AS1Q9H8Q6 139 aa13.52□□□□□ -0.25
CCDC28A-202ENST00000611852 CLPXO76031 633 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 CGB3P0DN86 165 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 CGB7P0DN87 165 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 GLP1RP43220 463 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 LSM3P62310 102 aaKnown RBP13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 NKAPLQ5M9Q1 402 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 ZNF497Q6ZNH5 498 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 ZNF418Q8TF45 676 aaPredicted RBP13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 ZNF48Q96MX3 618 aaPredicted RBP13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 NEDD4LQ96PU5 975 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 SUCNR1Q9BXA5 334 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 ETAA1Q9NY74 926 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 RAB22AQ9UL26 194 aa13.51□□□□□ -0.25
CCDC28A-202ENST00000611852 TMEM30CPA0ZSE6 113 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 ZNF729A6NN14 1252 aaPredicted RBP13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 TCF21O43680 179 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 MMP23AO75900 390 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 MT-ND4P03905 459 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 BLVRBP30043 206 aaPredicted RBP13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 C17orf58Q2M2W7 97 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 HEPN1Q6WQI6 88 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 USP43Q70EL4 1123 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 C6orf201Q7Z4U5 140 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 GAPTQ8N292 157 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 PNKDQ8N490 385 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 DYRK2Q92630 601 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 TSC22D3Q99576 134 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 DAPK2Q9UIK4 370 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 SESN1Q9Y6P5 492 aa13.5□□□□□ -0.25
CCDC28A-202ENST00000611852 TRAV39A0A0B4J263 110 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 KBTBD11-OT1A0A1B0GTJ5 212 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A1W2PRD5 423 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A1W2PRF3 423 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A1W2PRM7 423 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 UBE2QL1A1L167 161 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 FOXI3A8MTJ6 420 aaPredicted RBP13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 NPFFO15130 113 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 SOCS1O15524 211 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 CA11O75493 328 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 COX7A1P24310 79 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 CDK2P24941 298 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 EFNB2P52799 333 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 CTF1Q16619 201 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 PRAMEF5Q5TYX0 476 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 SIGLECL1Q8N7X8 197 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 MRGPRDQ8TDS7 321 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 SULT4A1Q9BR01 284 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 CALYQ9NYX4 217 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 ATRQ13535 2644 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A0A6YYJ9 748 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 A0A0U1RQK1 487 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 MDFIC2A0A1B0GVS7 189 aa13.49□□□□□ -0.25
CCDC28A-202ENST00000611852 RAB6AP20340 208 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms