RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 IDI2-AS1Q9NZ38 188 aa16.33■□□□□ 0.2
SHMT1-209ENST00000582653 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.33■□□□□ 0.2
SHMT1-209ENST00000582653 ST3GAL6Q9Y274 331 aa16.33■□□□□ 0.2
SHMT1-209ENST00000582653 EXOSC1Q9Y3B2 195 aaKnown RBP16.33■□□□□ 0.2
SHMT1-209ENST00000582653 IRGMA1A4Y4 181 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 J3QR06 171 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 AMY1AP04745 511 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 AMY2AP04746 511 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 MYL12AP19105 171 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 BDKRB2P30411 391 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 PPP3R1P63098 170 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 ADARB1P78563 741 aaKnown RBP16.32■□□□□ 0.2
SHMT1-209ENST00000582653 TTC23Q5W5X9 447 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 SUMF2Q8NBJ7 301 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 CAPSLQ8WWF8 208 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 SGCDQ92629 289 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 GGHQ92820 318 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 DPCDQ9BVM2 203 aaPredicted RBP16.32■□□□□ 0.2
SHMT1-209ENST00000582653 METTL9Q9H1A3 318 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 NCOR1P1Q9H4R4 102 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 NECAP2Q9NVZ3 263 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 PSG11Q9UQ72 335 aa16.32■□□□□ 0.2
SHMT1-209ENST00000582653 A0A1W2PRX2 142 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 MAGEA13PA6NCF6 341 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 OR2F2O95006 317 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 IL1AP01583 271 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 SERPINA2P20848 420 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 SSTR5P35346 364 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 GNG10P50151 68 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 DIAPH2-AS1Q14236 149 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 DMKNQ6E0U4 476 aaPredicted RBP16.31■□□□□ 0.2
SHMT1-209ENST00000582653 OSR2Q8N2R0 312 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 DHRSXQ8N5I4 330 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 OR52N1Q8NH53 320 aa16.31■□□□□ 0.2
SHMT1-209ENST00000582653 DNAH3Q8TD57 4116 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 TRBV5-5A0A0J9YX44 114 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 A0A1W2PP11 408 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 A0A1W2PPK0 400 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 OOSP1A8MZH6 123 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 NPIPB11E5RHQ5 1161 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 GEMIN2O14893 280 aaKnown RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 OR7C1O76099 320 aaPredicted RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 CSTBP04080 98 aaKnown RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 IGFBP3P17936 291 aaPredicted RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 MNDAP41218 407 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 RBM11P57052 281 aaKnown RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 LOXL3P58215 753 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 RPS11P62280 158 aaKnown RBP eCLIP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 RIPK1Q13546 671 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 TCTEX1D4Q5JR98 221 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 ZNF485Q8NCK3 441 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 TOMM40LQ969M1 308 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 RPEQ96AT9 228 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 ZNF184Q99676 751 aaPredicted RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 LINC00574Q9H8X3 128 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 CHCHD3Q9NX63 227 aaKnown RBP16.3■□□□□ 0.2
SHMT1-209ENST00000582653 IL36GQ9NZH8 169 aa16.3■□□□□ 0.2
SHMT1-209ENST00000582653 TRAV8-7A0A075B6U6 113 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 PNMA8CA0A1B0GUJ8 204 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 A0A1W2PPE3 182 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 PIN1P1O15428 100 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 KCNJ3P48549 501 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 PAX5Q02548 391 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 ST3GAL4Q11206 333 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 NHLRC3Q5JS37 347 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 C9orf152Q5JTZ5 239 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 LAIR2Q6ISS4 152 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 CCDC144NLQ6NUI1 221 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 C10orf99Q6UWK7 81 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 PACRGLQ8N7B6 248 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 SETD9Q8NE22 299 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 MRAPQ8TCY5 172 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 PHF21AQ96BD5 680 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 PGLYRP3Q96LB9 341 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 S100A13Q99584 98 aa16.29■□□□□ 0.2
SHMT1-209ENST00000582653 TSSC4Q9Y5U2 329 aaPredicted RBP16.29■□□□□ 0.2
SHMT1-209ENST00000582653 TCRBV4S1A1TA0A5B7 111 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 GNAO1P09471 354 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 CD33P20138 364 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 RCN1Q15293 331 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 SLC22A6Q4U2R8 563 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 ATAD3CQ5T2N8 411 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 FOXB2Q5VYV0 432 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 THNSL2Q86YJ6 484 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 OR56B4Q8NH76 319 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 UBALD1Q8TB05 177 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 IFT22Q9H7X7 185 aa16.28■□□□□ 0.2
SHMT1-209ENST00000582653 AURKAIP1Q9NWT8 199 aaPredicted RBP16.28■□□□□ 0.2
SHMT1-209ENST00000582653 AMMECR1Q9Y4X0 333 aaPredicted RBP16.28■□□□□ 0.2
SHMT1-209ENST00000582653 NOTCH3Q9UM47 2321 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A18PA6NE21 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A16PA6NEW6 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A20PA6NIJ5 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A9PA6NNJ1 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A12PA8MX19 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A5PA8MXJ8 464 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 M0QZK8 103 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 GPX5O75715 221 aa16.27■□□□□ 0.2
SHMT1-209ENST00000582653 SNRNP70P08621 437 aaKnown RBP16.27■□□□□ 0.2
SHMT1-209ENST00000582653 FAM90A15PP0C7V4 464 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms