RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FAM90A8PA6NJQ4 464 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 RGS10O43665 173 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 MAS1P04201 325 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 MYF6P23409 242 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 CEACAM3P40198 252 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 PRRX1P54821 245 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 RBM11P57052 281 aaKnown RBP6.56□□□□□ -1.36
VPS53-214ENST00000572607 SPHARQ15513 63 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 MPV17LQ2QL34 196 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 PIGYQ3MUY2 71 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 SLC22A6Q4U2R8 563 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 NHLRC3Q5JS37 347 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 ATAD3CQ5T2N8 411 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 PRAMEF5Q5TYX0 476 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 AWAT2Q6E213 333 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 C11orf88Q6PI97 169 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 CRIP3Q6Q6R5 217 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 GLIPR1L1Q6UWM5 242 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 HEPN1Q6WQI6 88 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 ASCL4Q6XD76 172 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 Q6ZSV7 163 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 CDH26Q8IXH8 852 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 ABHD12Q8N2K0 398 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 OR2T6Q8NHC8 308 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 LINC01006Q8NI28 216 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 CAPSLQ8WWF8 208 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 NRG4Q8WWG1 115 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 UFD1Q92890 307 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 MUL1Q969V5 352 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 ORAI1Q96D31 301 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 MRPS24Q96EL2 167 aaKnown RBP6.56□□□□□ -1.36
VPS53-214ENST00000572607 COQ2Q96H96 371 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 DERL3Q96Q80 235 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 NKX3-1Q99801 234 aaPredicted RBP6.56□□□□□ -1.36
VPS53-214ENST00000572607 DPCDQ9BVM2 203 aaPredicted RBP6.56□□□□□ -1.36
VPS53-214ENST00000572607 CDCA4Q9BXL8 241 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 ANKRD60Q9BZ19 345 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 CCDC90BQ9GZT6 254 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 C16orf95Q9H693 158 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 RANBP3Q9H6Z4 567 aaPredicted RBP6.56□□□□□ -1.36
VPS53-214ENST00000572607 SPACA1Q9HBV2 294 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 TCF7L1Q9HCS4 588 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 KIF25Q9UIL4 384 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 BLOC1S6Q9UL45 172 aa6.56□□□□□ -1.36
VPS53-214ENST00000572607 MRPS28Q9Y2Q9 187 aaKnown RBP6.56□□□□□ -1.36
VPS53-214ENST00000572607 TRAV8-7A0A075B6U6 113 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 TRBV5-7A0A0A0MS05 114 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 TRAV24A0A0B4J272 114 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 KBTBD11-OT1A0A1B0GTJ5 212 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 TMEM30CPA0ZSE6 113 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 VGLL3A8MV65 326 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 LEUTXA8MZ59 168 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 M0QZ24 198 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 GEMIN2O14893 280 aaKnown RBP6.55□□□□□ -1.36
VPS53-214ENST00000572607 TIMM23O14925 209 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 PEX14O75381 377 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 TSPAN9O75954 239 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 HSMCR30P0CW71 290 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 NFYBP25208 207 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 BRS3P32247 399 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 RPS11P62280 158 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS53-214ENST00000572607 RBM39Q14498 530 aaKnown RBP6.55□□□□□ -1.36
VPS53-214ENST00000572607 ACSM3Q53FZ2 586 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 RBM48Q5RL73 367 aaKnown RBP6.55□□□□□ -1.36
VPS53-214ENST00000572607 PRR31Q5SQ13 230 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 GLT8D1Q68CQ7 371 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 CCDC144NLQ6NUI1 221 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 IZUMO2Q6UXV1 221 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 SUMF2Q8NBJ7 301 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 Q8NFD4 153 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 OR9G1Q8NH87 305 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 MRGPRDQ8TDS7 321 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 TMED9Q9BVK6 235 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 CST11Q9H112 138 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 PPIL3Q9H2H8 161 aaKnown RBP6.55□□□□□ -1.36
VPS53-214ENST00000572607 NCOR1P1Q9H4R4 102 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 ZNF696Q9H7X3 374 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 IFT22Q9H7X7 185 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 RAB9BQ9NP90 201 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 CALYQ9NYX4 217 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 DPM3Q9P2X0 92 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 GHRLQ9UBU3 117 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 TCF19Q9Y242 345 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 AMMECR1Q9Y4X0 333 aaPredicted RBP6.55□□□□□ -1.36
VPS53-214ENST00000572607 HILPDAQ9Y5L2 63 aa6.55□□□□□ -1.36
VPS53-214ENST00000572607 FAM172BPA6NC97 362 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 MAGEA13PA6NCF6 341 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 MCRIP1C9JLW8 97 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 CRTAPO75718 401 aaPredicted RBP6.54□□□□□ -1.36
VPS53-214ENST00000572607 MMP23AO75900 390 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 IL1AP01583 271 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 UBBP0CG47 229 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 PSMA1P25786 263 aaKnown RBP6.54□□□□□ -1.36
VPS53-214ENST00000572607 PAX6P26367 422 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 CD34P28906 385 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 MNDAP41218 407 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 RANBP1P43487 201 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 KIR2DS4P43632 304 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 DYNLT3P51808 116 aa6.54□□□□□ -1.36
VPS53-214ENST00000572607 PROK1P58294 105 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms