RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZNF714Q96N38 554 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 RAB9BQ9NP90 201 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 ONECUT1Q9UBC0 465 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 OPN4Q9UHM6 478 aa16.92■□□□□ 0.3
VPS53-210ENST00000571456 TRRAPQ9Y4A5 3859 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 ZNF728P0DKX0 622 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 MMP9P14780 707 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 CHATP28329 748 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 BLVRBP30043 206 aaPredicted RBP16.91■□□□□ 0.3
VPS53-210ENST00000571456 SRP14P37108 136 aaKnown RBP16.91■□□□□ 0.3
VPS53-210ENST00000571456 NCS1P62166 190 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 ARF6P62330 175 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 GUCA2AQ02747 115 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 AESQ08117 197 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 ATXN7L3Q14CW9 347 aaPredicted RBP16.91■□□□□ 0.3
VPS53-210ENST00000571456 RSBN1Q5VWQ0 802 aaPredicted RBP16.91■□□□□ 0.3
VPS53-210ENST00000571456 C3orf56Q8N813 242 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 OR4M1Q8NGD0 313 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 ACOT12Q8WYK0 555 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 COQ2Q96H96 371 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 RIMS4Q9H426 269 aaPredicted RBP16.91■□□□□ 0.3
VPS53-210ENST00000571456 KIAA2026Q5HYC2 2103 aa16.91■□□□□ 0.3
VPS53-210ENST00000571456 A0A0A6YYH2 397 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 A6NJ64 397 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 ZNF729A6NN14 1252 aaPredicted RBP16.9■□□□□ 0.3
VPS53-210ENST00000571456 C17orf98A8MV24 154 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 CLEC2LP0C7M8 214 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 SLC2A2P11168 524 aaPredicted RBP16.9■□□□□ 0.3
VPS53-210ENST00000571456 GZMHP20718 246 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 PRTN3P24158 256 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 RORCP51449 518 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 IDNKQ5T6J7 187 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 SIGIRRQ6IA17 410 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 TRAT1Q6PIZ9 186 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 TRAPPC6BQ86SZ2 158 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 ZNF554Q86TJ5 538 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 GAPTQ8N292 157 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 AP3S1Q92572 193 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 DCSTAMPQ9H295 470 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 PLEKHJ1Q9NW61 149 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 SPATA2Q9UM82 520 aa16.9■□□□□ 0.3
VPS53-210ENST00000571456 MEIKINA0A087WXM9 373 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 SMIM30A4D0T7 59 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 HSPB6O14558 160 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 FSHBP01225 129 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 GLIPR1P48060 266 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 ERVFRD-1P60508 538 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 GPR157Q5UAW9 335 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 ZNF497Q6ZNH5 498 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 BPIFB2Q8N4F0 458 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 CMTM3Q96MX0 182 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 PCGF1Q9BSM1 259 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 HEXA-AS1Q9H8Q6 139 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 ETAA1Q9NY74 926 aa16.89■□□□□ 0.29
VPS53-210ENST00000571456 FOXI3A8MTJ6 420 aaPredicted RBP16.88■□□□□ 0.29
VPS53-210ENST00000571456 ZNF701M0R085 212 aaPredicted RBP16.88■□□□□ 0.29
VPS53-210ENST00000571456 AVPP01185 164 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 VEGFCP49767 419 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 ZNF273Q14593 569 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 TMEM30BQ3MIR4 351 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 NKAPLQ5M9Q1 402 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 OR52W1Q6IF63 320 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 Q6ZTK2 550 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 OR10A7Q8NGE5 316 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 LGALS14Q8TCE9 139 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 PHF21AQ96BD5 680 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 NICN1Q9BSH3 213 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 NAA50Q9GZZ1 169 aaKnown RBP16.88■□□□□ 0.29
VPS53-210ENST00000571456 KIF25Q9UIL4 384 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 NUP50Q9UKX7 468 aa16.88■□□□□ 0.29
VPS53-210ENST00000571456 SOX6P35712 828 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 TGFBR1P36897 503 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 COMPP49747 757 aaPredicted RBP16.87■□□□□ 0.29
VPS53-210ENST00000571456 DLX6P56179 175 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 C6orf183Q5T699 404 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 C1orf229Q6ZS94 237 aaPredicted RBP16.87■□□□□ 0.29
VPS53-210ENST00000571456 VMO1Q7Z5L0 202 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 Q8N7P7 452 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 OR10R2Q8NGX6 335 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 PLPPR1Q8TBJ4 325 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 ZFAND2BQ8WV99 257 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 RAB3CQ96E17 227 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 TBX15Q96SF7 602 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 KCNK15Q9H427 330 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 LINC00574Q9H8X3 128 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 RHBDL2Q9NX52 303 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 NDUFA13Q9P0J0 144 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 MGAT4AQ9UM21 535 aa16.87■□□□□ 0.29
VPS53-210ENST00000571456 SERPINE3A8MV23 424 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 RAB27BO00194 218 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 ORC5O43913 435 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 CLPXO76031 633 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 MT-ND4P03905 459 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 SNRPBP14678 240 aaKnown RBP16.86■□□□□ 0.29
VPS53-210ENST00000571456 FPR2P25090 351 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 DEFA6Q01524 100 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 HEPN1Q6WQI6 88 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 C9orf139Q6ZV77 190 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 MOB1BQ7L9L4 216 aa16.86■□□□□ 0.29
VPS53-210ENST00000571456 TCF23Q7RTU1 214 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms