RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SELLP14151 372 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 MAS1LP35410 378 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 RPL11P62913 178 aaKnown RBP7.73□□□□□ -1.17
YBX3-208ENST00000540447 RUNX2Q13950 521 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 TM4SF20Q53R12 229 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 NEUROG1Q92886 237 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 INSM2Q96T92 566 aaPredicted RBP7.73□□□□□ -1.17
YBX3-208ENST00000540447 ATP6V0BQ99437 205 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 HSD17B10Q99714 261 aaKnown RBP7.73□□□□□ -1.17
YBX3-208ENST00000540447 QTRT1Q9BXR0 403 aaKnown RBP7.73□□□□□ -1.17
YBX3-208ENST00000540447 POLDIP2Q9Y2S7 368 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 GNB1P62873 340 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 PRDX4Q13162 271 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 DLK2Q6UY11 383 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 DOLPP1Q86YN1 238 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 ZNF664Q8N3J9 261 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 TXNDC17Q9BRA2 123 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 SLC52A3Q9NQ40 469 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 MRPS18AQ9NVS2 196 aaKnown RBP7.73□□□□□ -1.17
YBX3-208ENST00000540447 XRN1Q8IZH2 1706 aaKnown RBP7.73□□□□□ -1.17
YBX3-208ENST00000540447 PPIAL4EA0A075B759 164 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 CA3P07451 260 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 PPIAL4FP0DN26 164 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 HOXC13P31276 330 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 EMDP50402 254 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 FUT6P51993 359 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 FNDC7Q5VTL7 733 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 RFLNAQ6ZTI6 216 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 LHFPL4Q7Z7J7 247 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 OR52E5Q8NH55 327 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 RHBDD1Q8TEB9 315 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 OBP2AQ9NY56 170 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 FLRT3Q9NZU0 649 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 THYN1Q9P016 225 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 PPIAL4AQ9Y536 164 aa7.73□□□□□ -1.17
YBX3-208ENST00000540447 IGKV6-21A0A0C4DH24 114 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 SOCS1O15524 211 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 DUX1O43812 170 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 HOXD9P28356 352 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 GAGE1Q13065 139 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 TTC9CQ8N5M4 171 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 TMEM252Q8N6L7 170 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 EDARADDQ8WWZ3 215 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 SMIM8Q96KF7 97 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 NRN1Q9NPD7 142 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 TMEM30AQ9NV96 361 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 ANKRD10Q9NXR5 420 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 A8MWL6 223 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 UMODP07911 640 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 CD1BP29016 333 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 TMEM95Q3KNT9 176 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 SPANXA1Q9NS26 97 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 TRAV9-2A0A087WT02 112 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 A8MWP6 167 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 ATXN7O15265 892 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 TMEM50BP56557 158 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 RNFT1Q5M7Z0 435 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 OR10D3Q8NH80 312 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 DCCP43146 1447 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 N4BP2Q86UW6 1770 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 EDN1P05305 212 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 TRA2AQ13595 282 aaKnown RBP eCLIP7.72□□□□□ -1.172e-6■■■■■ 27.7
YBX3-208ENST00000540447 PDCD1Q15116 288 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 KIRREL2Q6UWL6 708 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 SSMEM1Q8WWF3 244 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 APOBEC3DQ96AK3 386 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 SPSB1Q96BD6 273 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 DIRC2Q96SL1 478 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 REG4Q9BYZ8 158 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 FRRS1LQ9P0K9 344 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 LMO7Q8WWI1 1683 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 C4AP0C0L4 1744 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 C4BP0C0L5 1744 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 SERF1AO75920 110 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 ORM1P02763 201 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 SRP19P09132 144 aaKnown RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 SPINK8P0C7L1 97 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 HIST1H1AQ02539 215 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 ACSF3Q4G176 576 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 FAM71F2Q6NXP2 309 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 MMD2Q8IY49 270 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 LILRA3Q8N6C8 439 aaPredicted RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 RBKSQ9H477 322 aa7.72□□□□□ -1.17
YBX3-208ENST00000540447 MRM2Q9UI43 246 aaKnown RBP7.72□□□□□ -1.17
YBX3-208ENST00000540447 SEC11AP67812 179 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 PNKDQ8N490 385 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 FLYWCH2Q96CP2 140 aaKnown RBP7.71□□□□□ -1.17
YBX3-208ENST00000540447 DLG5Q8TDM6 1919 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 A0A1B0GU03 582 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 C5orf49A4QMS7 147 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 PMELP40967 661 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 APOBEC1P41238 236 aaKnown RBP7.71□□□□□ -1.17
YBX3-208ENST00000540447 TWIST1Q15672 202 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 CEACAM16Q2WEN9 425 aa7.71□□□□□ -1.17
YBX3-208ENST00000540447 BEX4Q9NWD9 120 aaPredicted RBP7.71□□□□□ -1.17
YBX3-208ENST00000540447 LAMB4A4D0S4 1761 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 TRAV8-7A0A075B6U6 113 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 A0A1W2PPE3 182 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 PTGESO14684 152 aa7.71□□□□□ -1.18
YBX3-208ENST00000540447 CEACAM6P40199 344 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms