RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 OR2W1Q9Y3N9 320 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 MKRN2OSH3BPM6 223 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 CEACAM6P40199 344 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 HBG1P69891 147 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 HBG2P69892 147 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM187Q14656 261 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM182Q6ZP80 229 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-213ENST00000540338 STPG2Q8N412 459 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 ADAMTS17Q8TE56 1095 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 WNT2BQ93097 391 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 RNF126Q9BV68 326 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 MTCH1Q9NZJ7 389 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 FZR1Q9UM11 496 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 ANAPC10Q9UM13 185 aa9.25□□□□□ -0.93
CLIP1-213ENST00000540338 ZNF407Q9C0G0 2248 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 NKX2-6A6NCS4 301 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 PRR33A8MZF0 331 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 POLR2GP62487 172 aaKnown RBP eCLIP9.24□□□□□ -0.93
CLIP1-213ENST00000540338 GABRA6Q16445 453 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 GNPNAT1Q96EK6 184 aaPredicted RBP9.24□□□□□ -0.93
CLIP1-213ENST00000540338 GALNT14Q96FL9 552 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 SH3BGRL2Q9UJC5 107 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 FAM24AA6NFZ4 105 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 AHRRA9YTQ3 701 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 SUPT4H1P63272 117 aaKnown RBP9.24□□□□□ -0.93
CLIP1-213ENST00000540338 IL24Q13007 206 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 HMGN3Q15651 99 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 CLEC9AQ6UXN8 241 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 RNF150Q9ULK6 438 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM210A6NLX4 147 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 CST7O76096 145 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 RPS23P62266 143 aaKnown RBP9.24□□□□□ -0.93
CLIP1-213ENST00000540338 ASCL4Q6XD76 172 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM222Q9H0R3 208 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 DLL3Q9NYJ7 618 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 SPRR3Q9UBC9 169 aa9.24□□□□□ -0.93
CLIP1-213ENST00000540338 RIF1Q5UIP0 2472 aaKnown RBP9.24□□□□□ -0.93
CLIP1-213ENST00000540338 TRAV39A0A0B4J263 110 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 CEACAM18A8MTB9 384 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 MBPP02686 304 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-213ENST00000540338 FGF2P09038 288 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 HKR1P10072 659 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 CBR1P16152 277 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 ZNF83P51522 516 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 SHEQ5VZ18 495 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 Q6ZT83 130 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 ZNF808Q8N4W9 903 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-213ENST00000540338 LFNGQ8NES3 379 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 TCTEX1D2Q8WW35 142 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 RPS10P5Q9NQ39 176 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 POMT1Q9Y6A1 747 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 MSGN1A6NI15 193 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 CLDN1O95832 211 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 ANOS1P23352 680 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 EDDM3BP56851 147 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 ERVK-16P61578 105 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 BHLHA15Q7RTS1 189 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-213ENST00000540338 OR2Z1Q8NG97 314 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 FN3KRPQ9HA64 309 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 PLSCR2Q9NRY7 297 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 TMEM218A2RU14 115 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 DBX1A6NMT0 343 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 RNASEK-C17orf49H0YIS7 233 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 TOR1AO14656 332 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 PRRG2O14669 202 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 HAND1O96004 215 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 ASCL1P50553 236 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 TLE4Q04727 773 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 SCCPDHQ8NBX0 429 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 SPRY4Q9C004 299 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 CEBPZOSA8MTT3 80 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 H0YIZ8 118 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 GAPDHP04406 335 aaKnown RBP9.23□□□□□ -0.93
CLIP1-213ENST00000540338 AMDHD2Q9Y303 409 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 KPTNQ9Y664 436 aa9.23□□□□□ -0.93
CLIP1-213ENST00000540338 PCNX2A6NKB5 2137 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 DUXBA0A1W2PPF3 345 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 HBE1P02100 147 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 OR3A1P47881 315 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 KCNJ3P48549 501 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 COLCA1Q6ZS62 124 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 SSC4DQ8WTU2 575 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 HPSE2Q8WWQ2 592 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 ENY2Q9NPA8 101 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 RCC1P18754 421 aaPredicted RBP9.22□□□□□ -0.93
CLIP1-213ENST00000540338 P2RY6Q15077 328 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 EIF2S3LQ2VIR3 472 aaKnown RBP9.22□□□□□ -0.93
CLIP1-213ENST00000540338 GVINP1Q7Z2Y8 2422 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 OR2H2O95918 312 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 IFNA1P01562 189 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 H2AFB1P0C5Y9 115 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 OR2B11Q5JQS5 317 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 MRGPRFQ96AM1 343 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 AIFM2Q9BRQ8 373 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 RSRP1Q9BUV0 290 aa9.22□□□□□ -0.93
CLIP1-213ENST00000540338 H3BP45 60 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 SNRNP70P08621 437 aaKnown RBP9.21□□□□□ -0.93
CLIP1-213ENST00000540338 IGHV1-2P23083 117 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 ALKBH6Q3KRA9 238 aa9.21□□□□□ -0.93
CLIP1-213ENST00000540338 COMMD1Q8N668 190 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms