RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 UNC119Q13432 240 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 SLC9A3R2Q15599 337 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 RAB11BQ15907 218 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 SIGIRRQ6IA17 410 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 TRAPPC6BQ86SZ2 158 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 PDZD9Q8IXQ8 264 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 TSPAN14Q8NG11 270 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 SSMEM1Q8WWF3 244 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 AJUBAQ96IF1 538 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 C19orf24Q9BVV8 132 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 TMEM59Q9BXS4 323 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 BANF2Q9H503 90 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 ZNRD1Q9P1U0 126 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 KIF25Q9UIL4 384 aa12.94□□□□□ -0.34
UPF3A-208ENST00000484246 MEIKINA0A087WXM9 373 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 KBTBD11-OT1A0A1B0GTJ5 212 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 NPIPB11E5RHQ5 1161 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 LDLRAD4O15165 306 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 PDCD6O75340 191 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 RBM39Q14498 530 aaKnown RBP12.93□□□□□ -0.34
UPF3A-208ENST00000484246 NEDD8Q15843 81 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 AANATQ16613 207 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 C17orf58Q2M2W7 97 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 OR52W1Q6IF63 320 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 RAB12Q6IQ22 244 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 ZNF782Q6ZMW2 699 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-208ENST00000484246 ZNF497Q6ZNH5 498 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 PNKDQ8N490 385 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 ZNF565Q8N9K5 539 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 BEND2Q8NDZ0 799 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 FAM46BQ96A09 425 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 TMEM133Q9H2Q1 129 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 PLGRKTQ9HBL7 147 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 VCX3AQ9NNX9 186 aa12.93□□□□□ -0.34
UPF3A-208ENST00000484246 TXNL4BQ9NX01 149 aaKnown RBP12.93□□□□□ -0.34
UPF3A-208ENST00000484246 TBL2Q9Y4P3 447 aaKnown RBP12.93□□□□□ -0.34
UPF3A-208ENST00000484246 MEX3AA1L020 520 aaKnown RBP12.92□□□□□ -0.34
UPF3A-208ENST00000484246 MEIOCA2RUB1 952 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 MCRIP1C9JLW8 97 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 MPIG6BO95866 241 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 IL1AP01583 271 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 ARSBP15848 533 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 JUNBP17275 347 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-208ENST00000484246 FUT3P21217 361 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 COX7A1P24310 79 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 CHATP28329 748 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 GLP1RP43220 463 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 ATAD3CQ5T2N8 411 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 C22orf42Q6IC83 251 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 RTN4RL2Q86UN3 420 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 FAM89BQ8N5H3 189 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-208ENST00000484246 OR10A7Q8NGE5 316 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 OR13A1Q8NGR1 328 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 SPATA3Q8NHX4 192 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 CALYQ9NYX4 217 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 STEAP1Q9UHE8 339 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 SSR3Q9UNL2 185 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 FAM96BQ9Y3D0 163 aa12.92□□□□□ -0.34
UPF3A-208ENST00000484246 IGHV2-26A0A0B4J1V2 119 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 IFITM5A6NNB3 132 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 AIPO00170 330 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 HOXA3O43365 443 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-208ENST00000484246 MMP23AO75900 390 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 MT-ND4P03905 459 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 RAB3BP20337 219 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 CDK2P24941 298 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 IER3P46695 156 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 RPL15P61313 204 aaKnown RBP12.91□□□□□ -0.34
UPF3A-208ENST00000484246 MINOS1Q5TGZ0 78 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 PRAMEF5Q5TYX0 476 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 OR10K2Q6IF99 312 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 TPRA1Q86W33 373 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 FAM3DQ96BQ1 224 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 CLEC7AQ9BXN2 247 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 LPAR5Q9H1C0 372 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 MEGF9Q9H1U4 602 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 PEX16Q9Y5Y5 336 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 MINOS1-NBL1R4GNA1 71 aa12.91□□□□□ -0.34
UPF3A-208ENST00000484246 FOXI3A8MTJ6 420 aaPredicted RBP12.9□□□□□ -0.34
UPF3A-208ENST00000484246 PAHP00439 452 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 CD36P16671 472 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 GZMHP20718 246 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 OR10A3P58181 314 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 P2RY14Q15391 338 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 TMEM30BQ3MIR4 351 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 TIMM50Q3ZCQ8 353 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 GDPGP1Q6ZNW5 385 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 ZNF554Q86TJ5 538 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 NR2C2APQ86WQ0 139 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 KIRREL1Q96J84 757 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 KCTD7Q96MP8 289 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 URM1Q9BTM9 101 aaKnown RBP12.9□□□□□ -0.34
UPF3A-208ENST00000484246 OR51E2Q9H255 320 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 DPAGT1Q9H3H5 408 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 KCNK15Q9H427 330 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 ETAA1Q9NY74 926 aa12.9□□□□□ -0.34
UPF3A-208ENST00000484246 A0A0A6YYD4 124 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 A0A1W2PRD5 423 aa12.89□□□□□ -0.35
UPF3A-208ENST00000484246 A0A1W2PRF3 423 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms