RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 GDPGP1Q6ZNW5 385 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 SIGLECL1Q8N7X8 197 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 OR13A1Q8NGR1 328 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 OR13F1Q8NGS4 319 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 ZNF48Q96MX3 618 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 NEDD4LQ96PU5 975 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 URM1Q9BTM9 101 aaKnown RBP12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 TM2D1Q9BX74 207 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 LPAR5Q9H1C0 372 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 HEXA-AS1Q9H8Q6 139 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 LIN7BQ9HAP6 207 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 ETAA1Q9NY74 926 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 TAS2R3Q9NYW6 316 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A0A6YYD4 124 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 TRAV39A0A0B4J263 110 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 TMEM272A0A1B0GTI8 110 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 MDFIC2A0A1B0GVS7 189 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 UBE2QL1A1L167 161 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 H3BUI4 141 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 NPFFO15130 113 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 CFPP27918 469 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 TGFBR1P36897 503 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 UBE2E1P51965 193 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 PRAMEF5Q5TYX0 476 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 SLC35E4Q6ICL7 350 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 RBMS3Q6XE24 437 aaKnown RBP12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 MRGPRDQ8TDS7 321 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 DYRK2Q92630 601 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 CYYR1Q96J86 154 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 FUNDC2Q9BWH2 189 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 NCOR1P1Q9H4R4 102 aa12.98□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A0U1RQK1 487 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 ZNF729A6NN14 1252 aaPredicted RBP12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 LDLRAD4O15165 306 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 MMP23AO75900 390 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 CDK2P24941 298 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 CHATP28329 748 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 BLVRBP30043 206 aaPredicted RBP12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 PLA2G7Q13093 441 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 DEFB112Q30KQ8 113 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 SFXN4Q6P4A7 337 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 ZNF497Q6ZNH5 498 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 USP43Q70EL4 1123 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 ZNF565Q8N9K5 539 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 FBLN5Q9UBX5 448 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 DAPK2Q9UIK4 370 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 SESN1Q9Y6P5 492 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 MEIOCA2RUB1 952 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 GLAP06280 429 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 OMGP23515 440 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 SAA4P35542 130 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 VEGFCP49767 419 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 HILS1P60008 231 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 HEPN1Q6WQI6 88 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 C6orf201Q7Z4U5 140 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 OR13D1Q8NGV5 346 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 CCDC107Q8WV48 283 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 ZDHHC16Q969W1 377 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 SULT4A1Q9BR01 284 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 CALYQ9NYX4 217 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 RAB22AQ9UL26 194 aa12.97□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A0A6YYJ9 748 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 KBTBD11-OT1A0A1B0GTJ5 212 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 SOCS1O15524 211 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 VENTXO95231 258 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 MT-ND4P03905 459 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 GDNFP39905 211 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 EFNB2P52799 333 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 C17orf58Q2M2W7 97 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 TUSC1Q2TAM9 212 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 RTN4RL2Q86UN3 420 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 FAM89BQ8N5H3 189 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 JMJD8Q96S16 334 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 FAAP24Q9BTP7 215 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 TMEM133Q9H2Q1 129 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 FAM96BQ9Y3D0 163 aa12.96□□□□□ -0.34
CCDC28A-201ENST00000332797 FAM172BPA6NC97 362 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 IL1AP01583 271 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 ARG1P05089 322 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 CGB3P0DN86 165 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 CGB7P0DN87 165 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 SSTR5P35346 364 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 BAMBIQ13145 260 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 DYNC1I2Q13409 638 aaKnown RBP12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 BAIAP2L2Q6UXY1 529 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 OR56B1Q8NGI3 324 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 OR4K15Q8NH41 348 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 ESM1Q9NQ30 184 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 PLEKHJ1Q9NW61 149 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 TRAPPC2LQ9UL33 140 aa12.95□□□□□ -0.34
CCDC28A-201ENST00000332797 IGHV2-26A0A0B4J1V2 119 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 CA11O75493 328 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 PAHP00439 452 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 TFAP2AP05549 437 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 SNRPBP14678 240 aaKnown RBP12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 RAB6AP20340 208 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 NFYBP25208 207 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 ALDH3B2P48448 385 aa12.94□□□□□ -0.34
CCDC28A-201ENST00000332797 LGALS4P56470 323 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms