RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 HEXA-AS1Q9H8Q6 139 aa9.07□□□□□ -0.96
LIG1-211ENST00000596457 LINC00312Q9Y6C7 94 aa9.07□□□□□ -0.96
LIG1-211ENST00000596457 CUBNO60494 3623 aa9.07□□□□□ -0.96
LIG1-211ENST00000596457 PKD1L1Q8TDX9 2849 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 A0A087WXM4 84 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 MEIKINA0A087WXM9 373 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 TRDV1A0A1B0GX56 115 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 ODAMA1E959 279 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 MEIOCA2RUB1 952 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 SMIM30A4D0T7 59 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 FAM172BPA6NC97 362 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 C17orf98A8MV24 154 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 TRIM77I1YAP6 450 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 PDCD5O14737 125 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 ERP29P30040 261 aaKnown RBP9.06□□□□□ -0.96
LIG1-211ENST00000596457 GLP1RP43220 463 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 UBE2E1P51965 193 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 DLX6P56179 175 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 LGALS4P56470 323 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 CLDN12P56749 244 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 DYNC1I2Q13409 638 aaKnown RBP9.06□□□□□ -0.96
LIG1-211ENST00000596457 RAB11BQ15907 218 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 MPV17LQ2QL34 196 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 C1orf100Q5SVJ3 147 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 HES5Q5TA89 166 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 PRAMEF5Q5TYX0 476 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 USP43Q70EL4 1123 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 TCF23Q7RTU1 214 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 LINC00596Q86U02 117 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 LYPD6Q86Y78 171 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 PIP4P2Q8N4L2 257 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 C11orf42Q8N5U0 333 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 ZDHHC22Q8N966 263 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 OR6M1Q8NGM8 313 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 CCDC107Q8WV48 283 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 TNFRSF14Q92956 283 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 COQ2Q96H96 371 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 C19orf24Q9BVV8 132 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 CST11Q9H112 138 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 OR51E2Q9H255 320 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 ESM1Q9NQ30 184 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 KIF25Q9UIL4 384 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 SSR3Q9UNL2 185 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 V9GY05 133 aa9.06□□□□□ -0.96
LIG1-211ENST00000596457 LOC100506127A0A0U1RQW1 187 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 UBE2QL1A1L167 161 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 DNAJC9-AS1A6NH13 148 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 MCRIP1C9JLW8 97 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 HOXA3O43365 443 aaPredicted RBP9.05□□□□□ -0.96
LIG1-211ENST00000596457 MMP23AO75900 390 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 PAHP00439 452 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 ARG1P05089 322 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 UBBP0CG47 229 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 IGHV1-8P0DP01 117 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 VSIG8P0DPA2 414 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 OMGP23515 440 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 SAA4P35542 130 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 LTC4SQ16873 150 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 NHLRC3Q5JS37 347 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 NKAPLQ5M9Q1 402 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 HCP5Q6MZN7 132 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 C9orf139Q6ZV77 190 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.05□□□□□ -0.96
LIG1-211ENST00000596457 OR13D1Q8NGV5 346 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 MRGPRDQ8TDS7 321 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 MRPS24Q96EL2 167 aaKnown RBP9.05□□□□□ -0.96
LIG1-211ENST00000596457 C1orf147Q96MC9 270 aaPredicted RBP9.05□□□□□ -0.96
LIG1-211ENST00000596457 CHCHD6Q9BRQ6 235 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 GAL3ST2Q9H3Q3 398 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 VCX3AQ9NNX9 186 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 TXNL4BQ9NX01 149 aaKnown RBP9.05□□□□□ -0.96
LIG1-211ENST00000596457 GHRLQ9UBU3 117 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 STUB1Q9UNE7 303 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 UBE2J1Q9Y385 318 aaPredicted RBP9.05□□□□□ -0.96
LIG1-211ENST00000596457 PEX16Q9Y5Y5 336 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 TGP01266 2768 aa9.05□□□□□ -0.96
LIG1-211ENST00000596457 SHISA3A0PJX4 238 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 SLC17A2O00624 439 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 SLC22A1O15245 554 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 CLPXO76031 633 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 BPNT1O95861 308 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 CSN2P05814 226 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 ARSBP15848 533 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 CD36P16671 472 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 RAB3BP20337 219 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 GADD45AP24522 165 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 CDK2P24941 298 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 NFYBP25208 207 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 PAX6P26367 422 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 OR10A3P58181 314 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 UBA52P62987 128 aaKnown RBP9.04□□□□□ -0.96
LIG1-211ENST00000596457 ACTG1P63261 375 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 SYT6Q5T7P8 510 aaPredicted RBP9.04□□□□□ -0.96
LIG1-211ENST00000596457 RSBN1Q5VWQ0 802 aaPredicted RBP9.04□□□□□ -0.96
LIG1-211ENST00000596457 RAB12Q6IQ22 244 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 BAIAP2L2Q6UXY1 529 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 Q6YL49 198 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 ZNF565Q8N9K5 539 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 OR51D1Q8NGF3 324 aa9.04□□□□□ -0.96
LIG1-211ENST00000596457 OR13A1Q8NGR1 328 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms