RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 LYPD6BQ8NI32 183 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 PLPPR1Q8TBJ4 325 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 OR5P2Q8WZ92 322 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 RAB8BQ92930 207 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 MED8Q96G25 268 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 KCTD7Q96MP8 289 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 DOK1Q99704 481 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 RASL11BQ9BPW5 248 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 VPS25Q9BRG1 176 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 NXF2Q9GZY0 626 aaKnown RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 NAA50Q9GZZ1 169 aaKnown RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 LRTM1Q9HBL6 345 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 NMRAL1Q9HBL8 299 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 SPANXB1Q9NS25 103 aaPredicted RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 GLTPQ9NZD2 209 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 JPT1Q9UK76 154 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 SLC17A4Q9Y2C5 497 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 SLC35A3Q9Y2D2 325 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 SIGLEC9Q9Y336 463 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 SNX24Q9Y343 169 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 UFC1Q9Y3C8 167 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 ATP7BP35670 1465 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 GRIN2BQ13224 1484 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 A0A1W2PP64 1363 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 MYH7P12883 1935 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 MED23Q9ULK4 1368 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 KIR2DS1A0A191URI9 304 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 NKX2-6A6NCS4 301 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 A6NDX4 124 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 CCDC182A6NF36 153 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 TVP23AA6NH52 213 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 EFCAB9A8MZ26 197 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 LEUTXA8MZ59 168 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 IDSB3KWA1 339 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 KCNK1O00180 336 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 GYG2O15488 501 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 MPZL2O60487 215 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 TPST1O60507 370 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 SLC16A7O60669 478 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 GGCTO75223 188 aaKnown RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 TSPAN19P0C672 248 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ZNF806P0C7X5 589 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 CHTF8P0CG12 524 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 LIPCP11150 499 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 IMPDH1P20839 514 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 AK4P27144 223 aaPredicted RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 S100GP29377 79 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 DDTP30046 118 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 FMO3P31513 532 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 EVX1P49640 407 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 RAB25P57735 213 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 GNG3P63215 75 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 BIKQ13323 160 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 OR2F1Q13607 317 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ZNF846Q147U1 533 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 KIR2DS1Q14954 304 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 CDK10Q15131 360 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 OR8G1Q15617 311 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 PSMD5Q16401 504 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 PRSS8Q16651 343 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 NRF1Q16656 503 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 TBC1D28Q2M2D7 210 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 TRMT5Q32P41 509 aaKnown RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 SAMD13Q5VXD3 122 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 PLET1Q6UQ28 207 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 SCIMPQ6UWF3 145 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 IZUMO2Q6UXV1 221 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 LINC00299Q6ZSB3 139 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 Q6ZT83 130 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 C4orf33Q8N1A6 199 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 SMIM20Q8N5G0 67 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 Q8N9W7 124 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 LINC00301Q8NCQ3 95 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ITFG1Q8TB96 612 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ACER1Q8TDN7 264 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 OR8D1Q8WZ84 308 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 CPNE2Q96FN4 548 aaPredicted RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 RNF185Q96GF1 192 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 PAGE5Q96GU1 130 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 SEC22AQ96IW7 307 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 OR2M2Q96R28 347 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 C1orf50Q9BV19 199 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 UGT2B28Q9BY64 529 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ACTR3CQ9C0K3 210 aaPredicted RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 OR11A1Q9GZK7 315 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 FAM96AQ9H5X1 160 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 BFARQ9NZS9 450 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 DHCR7Q9UBM7 475 aaKnown RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 AP4S1Q9Y587 144 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 TARBP1Q13395 1621 aaKnown RBP2.92□□□□□ -1.94
NUP88-208ENST00000574087 ABCC5O15440 1437 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ANKARQ7Z5J8 1434 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 TRAPPC8Q9Y2L5 1435 aa2.92□□□□□ -1.94
NUP88-208ENST00000574087 ADGRB2O60241 1585 aa2.91□□□□□ -1.94
NUP88-208ENST00000574087 ADGRL2O95490 1459 aa2.91□□□□□ -1.94
NUP88-208ENST00000574087 NUP153P49790 1475 aaKnown RBP2.91□□□□□ -1.94
NUP88-208ENST00000574087 ABCC10Q5T3U5 1492 aa2.91□□□□□ -1.94
NUP88-208ENST00000574087 SETD1AO15047 1707 aaKnown RBP2.91□□□□□ -1.94
NUP88-208ENST00000574087 DNMT1P26358 1616 aaKnown RBP2.91□□□□□ -1.94
NUP88-208ENST00000574087 ABCA9Q8IUA7 1624 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms