RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RPS10P46783 165 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 ATP1A1-AS1Q5TC04 95 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 SLC25A26Q70HW3 274 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 SAT2Q96F10 170 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 TAAR9Q96RI9 348 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 TP53RKQ96S44 253 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 PAPOLGQ9BWT3 736 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 SLC2A9Q9NRM0 540 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 C19orf12Q9NSK7 152 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 IL36RNQ9UBH0 155 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 MIOXQ9UGB7 285 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 CRYM-AS1A6NIL9 109 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 DNPH1O43598 174 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 SSSCA1O60232 199 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 MMP7P09237 267 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 EPHA1P21709 976 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 MDKP21741 143 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 CHATP28329 748 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 SNCAP37840 140 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 OSR2Q8N2R0 312 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 CPNE4Q96A23 557 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 BCL2L14Q9BZR8 327 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 GSN-AS1Q9NRJ2 163 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 NKX2-6A6NCS4 301 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 SULT1A1P50225 295 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 ABHD17BQ5VST6 288 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 SLC35G3Q8N808 338 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 PRRG4Q9BZD6 226 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 STRADBQ9C0K7 418 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 KCNJ16Q9NPI9 418 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 FAM212BQ9NTI7 297 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 CACNA1HO95180 2353 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 C5orf49A4QMS7 147 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 DHRS13Q6UX07 377 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 C10orf35Q96D05 121 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF703Q9H7S9 590 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 DNAJB11Q9UBS4 358 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 KCNIP3Q9Y2W7 256 aa14.22□□□□□ -0.13
CCDC88B-210ENST00000494566 TRAV39A0A0B4J263 110 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 AADACP22760 399 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 LHX2P50458 406 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 OR1C1Q15619 314 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 LHFPL2Q6ZUX7 228 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF611Q8N823 705 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 OR56B2PQ8NGI1 322 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 PARP11Q9NR21 331 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 BOKQ9UMX3 212 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 PCNX2A6NKB5 2137 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 CXorf66Q5JRM2 361 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 C9orf152Q5JTZ5 239 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 NEK7Q8TDX7 302 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 SLC7A11Q9UPY5 501 aa14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 RP1L1Q8IWN7 2480 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-210ENST00000494566 A0A1W2PR80 420 aa14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 H0YL77 283 aa14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 LY86O95711 162 aa14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 NGFP01138 241 aa14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 PPA1Q15181 289 aa14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 FGF23Q9GZV9 251 aaPredicted RBP14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 NAA60Q9H7X0 242 aa14.21□□□□□ -0.14
CCDC88B-210ENST00000494566 HSD17B6O14756 317 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 CLN5O75503 358 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 LYL1P12980 280 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 RAB5AP20339 215 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 EIF5AP63241 154 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 TMEM187Q14656 261 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 DAZAP2Q15038 168 aaPredicted RBP14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 C4orf17Q53FE4 359 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 TTTY12Q9BZ98 90 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 C12orf49Q9H741 205 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 GPM6AP51674 278 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 CLDN18P56856 261 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 PLGLB1Q02325 96 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 KRTAP27-1Q3LI81 207 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 TMEM42Q69YG0 159 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 OR2G3Q8NGZ4 309 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 SPRY4Q9C004 299 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 LIPGQ9Y5X9 500 aa14.2□□□□□ -0.14
CCDC88B-210ENST00000494566 GTF3C1Q12789 2109 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 CTSDP07339 412 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 NDUFA6P56556 154 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 PRR18Q8N4B5 295 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 NECAP2Q9NVZ3 263 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 LUZP4Q9P127 313 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 KPTNQ9Y664 436 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 CNOT1A5YKK6 2376 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 CHD3Q12873 2000 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 ZNF816-ZNF321PA0A0X1KG74 233 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 C5orf52A6NGY3 159 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 OR8U8P0C7N1 319 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 BCL3P20749 454 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 PCBD1P61457 104 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 EIF3IQ13347 325 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 DCAF10Q5QP82 559 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 RIPPLY2Q5TAB7 128 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 TMEM251Q8N6I4 163 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 FAM173AQ9BQD7 235 aa14.19□□□□□ -0.14
CCDC88B-210ENST00000494566 BORCS7-ASMTA0A0B4J1R7 106 aa14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 TERTO14746 1132 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-210ENST00000494566 TAAR5O14804 337 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms