RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 OR2A2Q6IF42 318 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 MRPL21Q7Z2W9 205 aaKnown RBP12.2□□□□□ -0.46
LIMD1-202ENST00000440097 BATF2Q8N1L9 274 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 POC1AQ8NBT0 407 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 MAFIPQ8WZ33 124 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 TRIB1Q96RU8 372 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 METTL9Q9H1A3 318 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 DNAJB11Q9UBS4 358 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 ARID1AO14497 2285 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 TRAV17A0A0B4J275 112 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 FOSL1P15407 271 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 TBPP20226 339 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 MALLQ13021 153 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 HMGN3Q15651 99 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 TMEM268Q5VZI3 342 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 C2orf50Q96LR7 162 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 PFDN5Q99471 154 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 NUDT16L1Q9BRJ7 211 aaKnown RBP12.2□□□□□ -0.46
LIMD1-202ENST00000440097 TUBA4BQ9H853 241 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 SPACA1Q9HBV2 294 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 ATRXP46100 2492 aa12.2□□□□□ -0.46
LIMD1-202ENST00000440097 ZNF816-ZNF321PA0A0X1KG74 233 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 ZNF729A6NN14 1252 aaPredicted RBP12.19□□□□□ -0.46
LIMD1-202ENST00000440097 ZNF850A8MQ14 1090 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 HKR1P10072 659 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 AMY2BP19961 511 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 TAF9Q16594 264 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 FBXW9Q5XUX1 488 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 C6orf201Q7Z4U5 140 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 C1QTNF5Q9BXJ0 243 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 PRDM14Q9GZV8 571 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 DMRT1Q9Y5R6 373 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 IGKV1-27A0A075B6S5 117 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 ZNF891A8MT65 544 aaPredicted RBP12.19□□□□□ -0.46
LIMD1-202ENST00000440097 TAAR5O14804 337 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 HOXB5P09067 269 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 PET100P0DJ07 73 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 ARR3P36575 388 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 OR3A2P47893 321 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 KRTAP27-1Q3LI81 207 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 Q6ZSR3 168 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 LHFPL2Q6ZUX7 228 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 CNEP1R1Q8N9A8 125 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 OR56B2PQ8NGI1 322 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 AMDHD2Q9Y303 409 aa12.19□□□□□ -0.46
LIMD1-202ENST00000440097 CST4P01036 141 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 SFTPBP07988 381 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 ALDH3B1P43353 468 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 RAB2AP61019 212 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 COL12A1Q99715 3063 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 SMIM3Q9BZL3 60 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 A0A1W2PPE2 198 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 A0A1W2PR80 420 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 WISP2O76076 250 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 TSPAN15O95858 294 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 NGFP01138 241 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 APLNRP35414 380 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 CSNK2A3Q8NEV1 391 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 OR5H2Q8NGV7 314 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 RTBDNQ9BSG5 229 aaPredicted RBP12.18□□□□□ -0.46
LIMD1-202ENST00000440097 PECRQ9BY49 303 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 PTPRBP23467 1997 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 MED12LQ86YW9 2145 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 GPX4P36969 197 aaPredicted RBP12.18□□□□□ -0.46
LIMD1-202ENST00000440097 FUT6P51993 359 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 SNU13P55769 128 aaKnown RBP12.18□□□□□ -0.46
LIMD1-202ENST00000440097 IL15RAQ13261 267 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 OR8B8Q15620 311 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 MIDNQ504T8 468 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 APOBEC3DQ96AK3 386 aaPredicted RBP12.18□□□□□ -0.46
LIMD1-202ENST00000440097 TOLLIPQ9H0E2 274 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 FBXL17Q9UF56 701 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 STARD10Q9Y365 291 aa12.18□□□□□ -0.46
LIMD1-202ENST00000440097 YIF1AO95070 293 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 LY86O95711 162 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 IL18BPO95998 194 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 SULT1A1P50225 295 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 GUK1Q16774 197 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 FAM89BQ8N5H3 189 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 LYPD6BQ8NI32 183 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 DLL3Q9NYJ7 618 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 SDCBPO00560 298 aaPredicted RBP12.17□□□□□ -0.46
LIMD1-202ENST00000440097 KLK10O43240 276 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 RPL12P30050 165 aaKnown RBP12.17□□□□□ -0.46
LIMD1-202ENST00000440097 SNCAP37840 140 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 NBL1P41271 181 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 RAB5CP51148 216 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 OR1K1Q8NGR3 316 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 NANOS1Q8WY41 292 aaKnown RBP12.17□□□□□ -0.46
LIMD1-202ENST00000440097 MALSU1Q96EH3 234 aa12.17□□□□□ -0.46
LIMD1-202ENST00000440097 GMPPAQ96IJ6 420 aaPredicted RBP12.17□□□□□ -0.46
LIMD1-202ENST00000440097 EIF5A2Q9GZV4 153 aaKnown RBP12.17□□□□□ -0.46
LIMD1-202ENST00000440097 SERPINE3A8MV23 424 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 GLRA1P23415 457 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 FPR2P25090 351 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 FCGR2CP31995 323 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 PIGYQ3MUY2 71 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 VAX1Q5SQQ9 334 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 BRICD5Q6PL45 260 aa12.16□□□□□ -0.46
LIMD1-202ENST00000440097 ZADH2Q8N4Q0 377 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms