RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 HDHD3Q9BSH5 251 aaPredicted RBP15.07■□□□□ 0
PTPRF-209ENST00000438120 TMUB1Q9BVT8 246 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 IGKV1D-16P01601 117 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 CSN3P07498 182 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 RNF224P0DH78 156 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 UQCC3Q6UW78 93 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 OR10D4PQ8NGN7 298 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 VAMP8Q9BV40 100 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 TRIP11Q15643 1979 aa15.07■□□□□ 0
PTPRF-209ENST00000438120 RPEL1Q2QD12 228 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 TGIF2LYQ8IUE0 185 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 ASB5Q8WWX0 329 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 RASL11BQ9BPW5 248 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 OR5AL1P0C617 328 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 SCGB1C2P0DMR2 95 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 HNRNPA3P51991 378 aaKnown RBP15.06■□□□□ 0
PTPRF-209ENST00000438120 SLC23A3Q6PIS1 610 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 OR1K1Q8NGR3 316 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 LIPGQ9Y5X9 500 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 GNG7O60262 68 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 USF1P22415 310 aaPredicted RBP15.06■□□□□ 0
PTPRF-209ENST00000438120 ADAD2Q8NCV1 583 aaKnown RBP15.06■□□□□ 0
PTPRF-209ENST00000438120 NUP214P35658 2090 aaPredicted RBP15.06■□□□□ 0
PTPRF-209ENST00000438120 MRPL24Q96A35 216 aaKnown RBP15.06■□□□□ 0
PTPRF-209ENST00000438120 VPS25Q9BRG1 176 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 MARVELD1Q9BSK0 173 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 TOLLIPQ9H0E2 274 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 TRAV34A0A0B4J273 112 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 CLDN34H7C241 214 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 MRGPRFQ96AM1 343 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 SCN3AQ9NY46 2000 aa15.06■□□□□ 0
PTPRF-209ENST00000438120 GSTZ1O43708 216 aaPredicted RBP15.05■□□□□ 0
PTPRF-209ENST00000438120 PDPNQ86YL7 162 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 SLC22A18ASQ8N1D0 253 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 OR4P4Q8NGL7 312 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 DTD1Q8TEA8 209 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 OR2J1Q9GZK6 312 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 PPYP01298 95 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 RPS4Y2Q8TD47 263 aa15.05■□□□□ 0
PTPRF-209ENST00000438120 FLYWCH2Q96CP2 140 aaKnown RBP15.05■□□□□ 0
PTPRF-209ENST00000438120 ADAT3Q96EY9 351 aaPredicted RBP15.05■□□□□ 0
PTPRF-209ENST00000438120 OR4C45A6NMZ5 311 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 RNF2Q99496 336 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 CXCL3P19876 107 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 EFNB2P52799 333 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 TPRX1Q8N7U7 411 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 ZNF665Q9H7R5 613 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 WASHC3Q9Y3C0 194 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 ARAP2Q8WZ64 1704 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 BRS3P32247 399 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 RPL13AP40429 203 aaKnown RBP15.05■□□□□ -0
PTPRF-209ENST00000438120 PSG5Q15238 335 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 SRD5A3Q9H8P0 318 aa15.05■□□□□ -0
PTPRF-209ENST00000438120 SNRPEP62304 92 aaKnown RBP15.04■□□□□ -0
PTPRF-209ENST00000438120 KLHDC1Q8N7A1 406 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 INSIG2Q9Y5U4 225 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 V9GYH0 126 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 MCM3APO60318 1980 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 UPK3AO75631 287 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 WFDC3Q8IUB2 231 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 TRPM6Q9BX84 2022 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 TUSC1Q2TAM9 212 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 FBXW9Q5XUX1 488 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 PCGF1Q9BSM1 259 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 ADAMTSL1Q8N6G6 1762 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 RPS4Y1P22090 263 aaKnown RBP15.04■□□□□ -0
PTPRF-209ENST00000438120 RSRP1Q9BUV0 290 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 MIXL1Q9H2W2 232 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 KLHDC2Q9Y2U9 406 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 C16orf97H3BN30 126 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 G0S2P27469 103 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 ISXQ2M1V0 245 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 NSUN5P2Q63ZY6 315 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 LYZL2Q7Z4W2 148 aa15.04■□□□□ -0
PTPRF-209ENST00000438120 VSIG8P0DPA2 414 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 CCL8P80075 99 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 MPV17LQ2QL34 196 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ADTRPQ96IZ2 230 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ASCL3Q9NQ33 180 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ECSCRQ19T08 205 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 VSTM2AQ8TAG5 236 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ATP5SQ99766 215 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 TRBV5-3A0A0A0MS03 114 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 HLA-GP17693 338 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 IL24Q13007 206 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 RNF212Q495C1 297 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ZNF764Q96H86 408 aaPredicted RBP15.03■□□□□ -0
PTPRF-209ENST00000438120 HARBI1Q96MB7 349 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 DCAF16Q9NXF7 216 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 CD40P25942 277 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 INPP5JQ15735 1006 aaPredicted RBP15.03■□□□□ -0
PTPRF-209ENST00000438120 RFLNBQ8N5W9 214 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 OPN3Q9H1Y3 402 aaPredicted RBP15.03■□□□□ -0
PTPRF-209ENST00000438120 RAG2P55895 527 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ZNF441Q8N8Z8 693 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ADAMTS17Q8TE56 1095 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 RNF133Q8WVZ7 376 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 SLC2A9Q9NRM0 540 aa15.03■□□□□ -0
PTPRF-209ENST00000438120 ZNF831Q5JPB2 1677 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 NKX2-6A6NCS4 301 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms