RNA–Protein interactions for RNA: YPR094W

RDS3, Transcript of Component of the SF3b subcomplex of the U2 snRNP, yeast

Gene RDS3, Length 324 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RDS3	YPR094W	ZDS1	P50111	915 aa	Known RBP	0.71	□□□□□ -2.3
RDS3	YPR094W	YGL260W	P53056	76 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	UTP8	P53276	713 aa	Known RBP	0.71	□□□□□ -2.3
RDS3	YPR094W	ORC4	P54791	529 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	REC102	Q02721	264 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	YDR514C	Q04408	483 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	YSH1	Q06224	779 aa	Predicted RBP	0.71	□□□□□ -2.3
RDS3	YPR094W	REH1	Q06709	432 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	NRT1	Q08485	598 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	PIN2	Q12057	282 aa		0.71	□□□□□ -2.3
RDS3	YPR094W	RPL7A	P05737	244 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	URE2	P23202	354 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	YCP4	P25349	247 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	VBA3	P25594	458 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	HEM3	P28789	327 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	RPL8B	P29453	256 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	ATO2	P32907	282 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	ELF1	P36053	145 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	EXO1	P39875	702 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	GID8	P40208	455 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	YIL077C	P40508	320 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	YIL024C	P40543	189 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	OPT1	P40897	799 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	ALY2	P47029	1046 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	ZAP1	P47043	880 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	LYS20	P48570	428 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	COX18	P53239	316 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	LEE1	Q02799	301 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	ATP25	Q03153	612 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	TRS23	Q03784	219 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	UFO1	Q04511	668 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	MET7	Q08645	548 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	RPL7B	Q12213	244 aa	Known RBP	0.7	□□□□□ -2.3
RDS3	YPR094W	YLR111W	Q12528	110 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	YMR230W-A	Q3E7B5	62 aa		0.7	□□□□□ -2.3
RDS3	YPR094W	SEC3	P33332	1336 aa	Known RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	RPS9B	P05755	195 aa	Known RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	HEM1	P09950	548 aa	Predicted RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	YEL076C-A	P0CX16	216 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	YLR464W	P0CX17	216 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	YCR043C	P25361	127 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	RPC34	P32910	317 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	AKL1	P38080	1108 aa	Known RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	YBR139W	P38109	508 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	ARC40	P38328	384 aa	Known RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	YMR124W	P39523	943 aa	Known RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	YEL076C	P39971	216 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	MAD1	P40957	749 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	YJL043W	P47053	257 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	BNA2	P47125	453 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	RPL15B	P54780	204 aa	Predicted RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	AAT1	Q01802	451 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	MRPL1	Q04599	285 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	TDA5	Q06417	326 aa	Known RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	IZH3	Q07959	543 aa		0.69	□□□□□ -2.3
RDS3	YPR094W	DIA2	Q08496	732 aa	Predicted RBP	0.69	□□□□□ -2.3
RDS3	YPR094W	CPA2	P03965	1118 aa	Known RBP	0.68	□□□□□ -2.3
RDS3	YPR094W	FMP46	P36141	133 aa	Known RBP	0.68	□□□□□ -2.3
RDS3	YPR094W	APD1	P38281	316 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	COS111	P38308	924 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	GND1	P38720	489 aa	Known RBP	0.68	□□□□□ -2.3
RDS3	YPR094W	RIM4	P38741	713 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	ALG2	P43636	503 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	YNL018C	P53976	612 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	ARP4	P80428	489 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	RTT103	Q05543	409 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	BSP1	Q06604	576 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	YFT2	Q06676	274 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	0.68	□□□□□ -2.3	RIP-Chip
RDS3	YPR094W	ZPS1	Q12512	249 aa		0.68	□□□□□ -2.3
RDS3	YPR094W	TOM70	P07213	617 aa	Known RBP	0.67	□□□□□ -2.3
RDS3	YPR094W	ERG20	P08524	352 aa	Known RBP	0.67	□□□□□ -2.3
RDS3	YPR094W	AIM17	P23180	465 aa	Known RBP	0.67	□□□□□ -2.3
RDS3	YPR094W	ARE1	P25628	610 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	GSY2	P27472	705 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	ASF1	P32447	279 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	YKR051W	P36142	418 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	BET3	P36149	193 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	CFD1	P40558	293 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	YFL052W	P43551	465 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	YFL015C	P43578	164 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	ERP6	P53198	216 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	COP1	P53622	1201 aa	Known RBP	0.67	□□□□□ -2.3
RDS3	YPR094W	YMR317W	Q04893	1140 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	RDL1	Q12305	139 aa	Known RBP	0.67	□□□□□ -2.3
RDS3	YPR094W	AIM44	Q99299	758 aa		0.67	□□□□□ -2.3
RDS3	YPR094W	MIH1	P23748	554 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	GRX1	P25373	110 aa	Known RBP	0.66	□□□□□ -2.3
RDS3	YPR094W	NTH1	P32356	751 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	YPT7	P32939	208 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	MRPL7	P36519	292 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	EXO84	P38261	753 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	HSL7	P38274	827 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	PIH1	P38768	344 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	RTT107	P38850	1070 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	FAA2	P39518	744 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	VAC8	P39968	578 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	YIL152W	P40455	235 aa		0.66	□□□□□ -2.3
RDS3	YPR094W	TES1	P41903	349 aa	Known RBP	0.66	□□□□□ -2.3
RDS3	YPR094W	SKP2	P42843	763 aa		0.66	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 39.1 ms