RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W PMA2P19657 947 aa1.66□□□□□ -2.14
PRP42YDR235W APD1P38281 316 aa1.66□□□□□ -2.14
PRP42YDR235W MIP6P38760 659 aaKnown RBP1.66□□□□□ -2.14
PRP42YDR235W OAF1P39720 1047 aaPredicted RBP1.66□□□□□ -2.14
PRP42YDR235W RSC8P43609 557 aaKnown RBP1.66□□□□□ -2.14
PRP42YDR235W MET7Q08645 548 aa1.66□□□□□ -2.14
PRP42YDR235W SEC6P32844 805 aa1.66□□□□□ -2.14
PRP42YDR235W YGL260WP53056 76 aa1.66□□□□□ -2.14
PRP42YDR235W YDR338CQ05497 695 aa1.66□□□□□ -2.14
PRP42YDR235W TDA5Q06417 326 aaKnown RBP1.66□□□□□ -2.14
PRP42YDR235W SNA4Q07549 140 aa1.66□□□□□ -2.14
PRP42YDR235W ERG20P08524 352 aaKnown RBP1.65□□□□□ -2.15
PRP42YDR235W AQY1P0CD91 305 aa1.65□□□□□ -2.15
PRP42YDR235W NAP1P25293 417 aaKnown RBP1.65□□□□□ -2.15
PRP42YDR235W FEN2P25621 512 aaKnown RBP1.65□□□□□ -2.15
PRP42YDR235W RPC34P32910 317 aa1.65□□□□□ -2.15
PRP42YDR235W ARC40P38328 384 aaKnown RBP1.65□□□□□ -2.15
PRP42YDR235W YMR124WP39523 943 aaKnown RBP1.65□□□□□ -2.15
PRP42YDR235W ALY2P47029 1046 aa1.65□□□□□ -2.15
PRP42YDR235W RFX1P48743 811 aa1.65□□□□□ -2.15
PRP42YDR235W SNF12P53628 566 aa1.65□□□□□ -2.15
PRP42YDR235W JIP5Q06214 492 aaPredicted RBP1.65□□□□□ -2.15
PRP42YDR235W NTH1P32356 751 aa1.64□□□□□ -2.15
PRP42YDR235W ATO2P32907 282 aa1.64□□□□□ -2.15
PRP42YDR235W YBR139WP38109 508 aa1.64□□□□□ -2.15
PRP42YDR235W RIM4P38741 713 aa1.64□□□□□ -2.15
PRP42YDR235W YJL043WP47053 257 aa1.64□□□□□ -2.15
PRP42YDR235W ATP25Q03153 612 aa1.64□□□□□ -2.15
PRP42YDR235W RPL7AP05737 244 aaKnown RBP1.63□□□□□ -2.15
PRP42YDR235W PER1P25625 357 aa1.63□□□□□ -2.15
PRP42YDR235W HSL7P38274 827 aa1.63□□□□□ -2.15
PRP42YDR235W VAC8P39968 578 aa1.63□□□□□ -2.15
PRP42YDR235W YNL195CP40168 261 aa1.63□□□□□ -2.15
PRP42YDR235W GID8P40208 455 aa1.63□□□□□ -2.15
PRP42YDR235W YFL052WP43551 465 aa1.63□□□□□ -2.15
PRP42YDR235W BNA2P47125 453 aa1.63□□□□□ -2.15
PRP42YDR235W ALD6P54115 500 aaKnown RBP1.63□□□□□ -2.15
PRP42YDR235W DAK1P54838 584 aaKnown RBP1.63□□□□□ -2.15
PRP42YDR235W TRS23Q03784 219 aa1.63□□□□□ -2.15
PRP42YDR235W RPL7BQ12213 244 aaKnown RBP1.63□□□□□ -2.15
PRP42YDR235W YER190C-BP0CX94 160 aa1.62□□□□□ -2.15
PRP42YDR235W YEL077W-AP0CX95 160 aa1.62□□□□□ -2.15
PRP42YDR235W YGR296C-BP0CX96 160 aa1.62□□□□□ -2.15
PRP42YDR235W YPL283W-BP0CX97 160 aa1.62□□□□□ -2.15
PRP42YDR235W YPR204C-AP0CX98 160 aa1.62□□□□□ -2.15
PRP42YDR235W RPL8BP29453 256 aaKnown RBP1.62□□□□□ -2.15
PRP42YDR235W MSS1P32559 526 aaPredicted RBP1.62□□□□□ -2.15
PRP42YDR235W ELF1P36053 145 aa1.62□□□□□ -2.15
PRP42YDR235W YIL077CP40508 320 aa1.62□□□□□ -2.15
PRP42YDR235W YIL024CP40543 189 aa1.62□□□□□ -2.15
PRP42YDR235W BST1P43571 1029 aa1.62□□□□□ -2.15
PRP42YDR235W ALG2P43636 503 aa1.62□□□□□ -2.15
PRP42YDR235W ERP6P53198 216 aa1.62□□□□□ -2.15
PRP42YDR235W SVF1Q05515 481 aa1.62□□□□□ -2.15
PRP42YDR235W NRT1Q08485 598 aa1.62□□□□□ -2.15
PRP42YDR235W YMR085WP0CF18 432 aa1.62□□□□□ -2.15
PRP42YDR235W OPT1P40897 799 aa1.62□□□□□ -2.15
PRP42YDR235W LYS20P48570 428 aaKnown RBP1.62□□□□□ -2.15
PRP42YDR235W BSP1Q06604 576 aa1.62□□□□□ -2.15
PRP42YDR235W GRS2Q06817 618 aa1.62□□□□□ -2.15
PRP42YDR235W ZPS1Q12512 249 aa1.62□□□□□ -2.15
PRP42YDR235W TOM70P07213 617 aaKnown RBP1.61□□□□□ -2.15
PRP42YDR235W ARE1P25628 610 aa1.61□□□□□ -2.15
PRP42YDR235W PIH1P38768 344 aa1.61□□□□□ -2.15
PRP42YDR235W Q0142Q9ZZW4 58 aa1.61□□□□□ -2.15
PRP42YDR235W YFT2Q06676 274 aa1.6□□□□□ -2.15
PRP42YDR235W SPO75Q07798 868 aa1.6□□□□□ -2.15
PRP42YDR235W IZH3Q07959 543 aa1.6□□□□□ -2.15
PRP42YDR235W YMR084WA2P2R3 262 aa1.59□□□□□ -2.15
PRP42YDR235W CPA2P03965 1118 aaKnown RBP1.59□□□□□ -2.15
PRP42YDR235W YEL076C-AP0CX16 216 aa1.59□□□□□ -2.15
PRP42YDR235W YLR464WP0CX17 216 aa1.59□□□□□ -2.15
PRP42YDR235W YCP4P25349 247 aaKnown RBP1.59□□□□□ -2.15
PRP42YDR235W GRX1P25373 110 aaKnown RBP1.59□□□□□ -2.15
PRP42YDR235W COS111P38308 924 aa1.59□□□□□ -2.15
PRP42YDR235W RTT107P38850 1070 aa1.59□□□□□ -2.15
PRP42YDR235W MTG2P38860 518 aa1.59□□□□□ -2.15
PRP42YDR235W YEL076CP39971 216 aa1.59□□□□□ -2.15
PRP42YDR235W THI6P41835 540 aa1.59□□□□□ -2.15
PRP42YDR235W TY4A-JP47023 414 aa1.59□□□□□ -2.15
PRP42YDR235W NAN1Q02931 896 aaKnown RBP1.59□□□□□ -2.15
PRP42YDR235W YLR111WQ12528 110 aa1.59□□□□□ -2.15
PRP42YDR235W AIM44Q99299 758 aa1.59□□□□□ -2.15
PRP42YDR235W EXO1P39875 702 aa1.58□□□□□ -2.16
PRP42YDR235W CFD1P40558 293 aa1.58□□□□□ -2.16
PRP42YDR235W SKP2P42843 763 aa1.58□□□□□ -2.16
PRP42YDR235W NPY1P53164 384 aa1.58□□□□□ -2.16
PRP42YDR235W TAF8Q03750 510 aa1.58□□□□□ -2.16
PRP42YDR235W SMA2Q04658 369 aa1.58□□□□□ -2.16
PRP42YDR235W RTT103Q05543 409 aa1.58□□□□□ -2.16
PRP42YDR235W YDL124WQ07551 312 aaKnown RBP1.58□□□□□ -2.16
PRP42YDR235W SSF2Q12153 453 aaPredicted RBP1.58□□□□□ -2.16
PRP42YDR235W POM34Q12445 299 aa1.58□□□□□ -2.16
PRP42YDR235W HSP60P19882 572 aaKnown RBP1.58□□□□□ -2.16
PRP42YDR235W GSY2P27472 705 aa1.58□□□□□ -2.16
PRP42YDR235W BET3P36149 193 aa1.58□□□□□ -2.16
PRP42YDR235W AKL1P38080 1108 aaKnown RBP1.58□□□□□ -2.16
PRP42YDR235W MDV1P47025 714 aa1.58□□□□□ -2.16
PRP42YDR235W RDL1Q12305 139 aaKnown RBP1.58□□□□□ -2.16
PRP42YDR235W OSH2Q12451 1283 aa1.58□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 47.8 ms