RNA–Protein interactions for RNA: YDL091C

UBX3, Transcript of Subunit of the DSC ubiquitin ligase complex, yeast

Gene UBX3, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX3	YDL091C	SWI6	P09959	803 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	ABF1	P14164	731 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	CCT5	P40413	562 aa	Known RBP	4.11	□□□□□ -1.75
UBX3	YDL091C	BFA1	P47113	574 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	HLJ1	P48353	224 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	RFX1	P48743	811 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	YGR151C	P53287	111 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	APM1	Q00776	475 aa	Predicted RBP	4.11	□□□□□ -1.75
UBX3	YDL091C	YMR210W	Q03649	449 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	ARO10	Q06408	635 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	THI73	Q07904	523 aa		4.11	□□□□□ -1.75
UBX3	YDL091C	IME1	P21190	360 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	KIN82	P25341	720 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	MSS1	P32559	526 aa	Predicted RBP	4.1	□□□□□ -1.75
UBX3	YDL091C	GMH1	P36125	273 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	FLO10	P36170	1169 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	CTP1	P38152	299 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	RIX1	P38883	763 aa	Predicted RBP	4.1	□□□□□ -1.75
UBX3	YDL091C	YEL020C	P39994	560 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	KHA1	P40309	873 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	YIL077C	P40508	320 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	MPS3	P47069	682 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	RCR2	Q03446	210 aa	Known RBP	4.1	□□□□□ -1.75
UBX3	YDL091C	YFT2	Q06676	274 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	YDL086W	Q07505	273 aa		4.1	□□□□□ -1.75
UBX3	YDL091C	BMS1	Q08965	1183 aa	Known RBP	4.1	□□□□□ -1.75
UBX3	YDL091C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
UBX3	YDL091C	PRP19	P32523	503 aa	Known RBP	4.09	□□□□□ -1.75
UBX3	YDL091C	TYS1	P36421	394 aa	Known RBP	4.09	□□□□□ -1.75
UBX3	YDL091C	COS111	P38308	924 aa		4.09	□□□□□ -1.75
UBX3	YDL091C	FPR3	P38911	411 aa	Known RBP	4.09	□□□□□ -1.75
UBX3	YDL091C	PMT3	P47190	753 aa		4.09	□□□□□ -1.75
UBX3	YDL091C	MTQ2	Q03920	221 aa	Predicted RBP	4.09	□□□□□ -1.75
UBX3	YDL091C	VBA4	Q04602	768 aa	Known RBP	4.09	□□□□□ -1.75
UBX3	YDL091C	YPS7	Q06325	596 aa		4.09	□□□□□ -1.75
UBX3	YDL091C	SPO11	P23179	398 aa		4.08	□□□□□ -1.76
UBX3	YDL091C	KCC4	P25389	1037 aa		4.08	□□□□□ -1.76
UBX3	YDL091C	NTH1	P32356	751 aa		4.08	□□□□□ -1.76
UBX3	YDL091C	YHR097C	P38809	366 aa	Known RBP	4.08	□□□□□ -1.76
UBX3	YDL091C	HXT6	P39003	570 aa	Known RBP	4.08	□□□□□ -1.76
UBX3	YDL091C	HXT7	P39004	570 aa		4.08	□□□□□ -1.76
UBX3	YDL091C	GZF3	P42944	551 aa	Known RBP	4.08	□□□□□ -1.76
UBX3	YDL091C	YJR142W	P47173	342 aa		4.08	□□□□□ -1.76
UBX3	YDL091C	YNR029C	P53729	429 aa	Known RBP	4.08	□□□□□ -1.76
UBX3	YDL091C	YSH1	Q06224	779 aa	Predicted RBP	4.08	□□□□□ -1.76
UBX3	YDL091C	SEC15	P22224	910 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	PRP22	P24384	1145 aa	Known RBP	4.07	□□□□□ -1.76
UBX3	YDL091C	KSP1	P38691	1029 aa	Known RBP	4.07	□□□□□ -1.76
UBX3	YDL091C	MUP3	P38734	546 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	PAC2	P39937	518 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	BUD8	P41698	603 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	YGR153W	P48238	217 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	MRK1	P50873	501 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	IMO32	P53219	342 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	NOP15	P53927	220 aa	Predicted RBP	4.07	□□□□□ -1.76
UBX3	YDL091C	ECM9	Q02202	377 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	STP4	Q07351	490 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	RPS21B	Q3E754	87 aa	Known RBP	4.07	□□□□□ -1.76
UBX3	YDL091C	APM4	Q99186	491 aa		4.07	□□□□□ -1.76
UBX3	YDL091C	RPS17A	P02407	136 aa	Known RBP	4.06	□□□□□ -1.76
UBX3	YDL091C	RPS9B	P05755	195 aa	Known RBP	4.06	□□□□□ -1.76
UBX3	YDL091C	RPS17B	P14127	136 aa	Known RBP	4.06	□□□□□ -1.76
UBX3	YDL091C	YMC2	P38087	329 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	PXA1	P41909	870 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	UME1	Q03010	460 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	COQ11	Q05892	277 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	IZH3	Q07959	543 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	YTM1	Q12024	460 aa	Predicted RBP	4.06	□□□□□ -1.76
UBX3	YDL091C	HFI1	Q12060	488 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	RKI1	Q12189	258 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	YGR161W-C	Q3E744	92 aa		4.06	□□□□□ -1.76
UBX3	YDL091C	SEC65	P29478	273 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	OAF3	P36023	863 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	APL3	P38065	1025 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	MIT1	P40002	666 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	IES1	P43579	692 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	MNN11	P46985	422 aa	Known RBP	4.05	□□□□□ -1.76
UBX3	YDL091C	GPG1	P53130	126 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	NMA2	P53204	395 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	SPC98	P53540	846 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	SPO1	P53541	631 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	SNF12	P53628	566 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	PPN1	Q04119	674 aa		4.05	□□□□□ -1.76
UBX3	YDL091C	PEX2	P32800	271 aa		4.04	□□□□□ -1.76
UBX3	YDL091C	DID4	P36108	232 aa		4.04	□□□□□ -1.76
UBX3	YDL091C	OAF1	P39720	1047 aa	Predicted RBP	4.04	□□□□□ -1.76
UBX3	YDL091C	DOS2	P54858	310 aa		4.04	□□□□□ -1.76
UBX3	YDL091C	NSE5	Q03718	556 aa		4.04	□□□□□ -1.76
UBX3	YDL091C	HFD1	Q04458	532 aa		4.04	□□□□□ -1.76
UBX3	YDL091C	YNL162W-A	Q3E7A8	72 aa		4.04	□□□□□ -1.76
UBX3	YDL091C	PHO5	P00635	467 aa		4.03	□□□□□ -1.76
UBX3	YDL091C	GPP1	P41277	250 aa	Known RBP	4.03	□□□□□ -1.76
UBX3	YDL091C	DIP5	P53388	608 aa		4.03	□□□□□ -1.76
UBX3	YDL091C	FDC1	Q03034	503 aa		4.03	□□□□□ -1.76
UBX3	YDL091C	UFO1	Q04511	668 aa		4.03	□□□□□ -1.76
UBX3	YDL091C	LAM4	P38800	1345 aa		4.03	□□□□□ -1.76
UBX3	YDL091C	NUP145	P49687	1317 aa		4.03	□□□□□ -1.76
UBX3	YDL091C	PRE4	P30657	266 aa		4.02	□□□□□ -1.77
UBX3	YDL091C	PMT6	P42934	759 aa		4.02	□□□□□ -1.77
UBX3	YDL091C	TAF4	P50105	388 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 146.1 ms