RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 METTL24Q5JXM2 366 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 TTC39BQ5VTQ0 682 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 MYRIPQ8NFW9 859 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 KIAA1524Q8TCG1 905 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC68Q9H2F9 335 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 RHBDL2Q9NX52 303 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 MYH13Q9UKX3 1938 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ENO4A6NNW6 628 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 SFI1A8K8P3 1242 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 HS1BP3Q53T59 392 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CTNNA3Q9UI47 895 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 TPPPO94811 219 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ZNF16P17020 682 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 TAF7Q15545 349 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 A6NJR5 290 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 SPDYE16A6NNV3 312 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 LMAN1P49257 510 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CTCFP49711 727 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 RWDD2BP57060 319 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 AMPD3Q01432 767 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC186Q7Z3E2 898 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 COQ7Q99807 217 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 MAPK8IP3Q9UPT6 1336 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 INMTO95050 263 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 GUCY2CP25092 1073 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 DDB1Q16531 1140 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 FILIP1LQ4L180 1135 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ESCO1Q5FWF5 840 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 AGAP9Q5VTM2 703 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 RRN3Q9NYV6 651 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 PDE1CQ14123 709 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 WTAPQ15007 396 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CAPN12Q6ZSI9 719 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CFAP57Q96MR6 1250 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 DIAPH1O60610 1272 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 USO1O60763 962 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 TSPAN9O75954 239 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CHKAP35790 457 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 TAGLNQ01995 201 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 EXOSC9Q06265 439 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC158Q5M9N0 1113 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 KIF6Q6ZMV9 814 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 USTQ9Y2C2 406 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 IL16Q14005 1332 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 E2F6O75461 281 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 IDEP14735 1019 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CAPN2P17655 700 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 PSMD7P51665 324 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 WHAMMP3Q1A5X7 153 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ARHGAP18Q8N392 663 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 PPM1EQ8WY54 764 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ARHGEF2Q92974 986 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.05□□□□□ -1.763e-8■□□□□ 9.3
SCN1A-221ENST00000641996 API5Q9BZZ5 524 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ERC2O15083 957 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 NBNO60934 754 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ADCY5O95622 1261 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 STK38Q15208 465 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 GALNT17Q6IS24 598 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 ERP27Q96DN0 273 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CNNM2Q9H8M5 875 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 PRM3Q9NNZ6 103 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 FLOT1O75955 427 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CAPRIN2Q6IMN6 1127 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 FAM117BQ6P1L5 589 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CHPFQ8IZ52 775 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 SLC7A5P2Q9GIP4 190 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 VCPKMTQ9H867 229 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CETN1Q12798 172 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MAP7Q14244 749 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MUM1Q2TAK8 710 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 DCAF8Q5TAQ9 597 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 DDX11L8A8MPP1 907 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PRPF40AO75400 957 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 EZRP15311 586 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 U2AF2P26368 475 aaKnown RBP eCLIP4.04□□□□□ -1.761e-6■■■□□ 14.9
SCN1A-221ENST00000641996 HSPA1LP34931 641 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PDE3BQ13370 1112 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CLEC4GQ6UXB4 293 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 MIER3Q7Z3K6 550 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 SLC3A2P08195 630 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CETN2P41208 172 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ATP2B2Q01814 1243 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ADCY1Q08828 1119 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 RFX8Q6ZV50 586 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ARMC2Q8NEN0 867 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PIP4K2CQ8TBX8 421 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 TSNARE1Q96NA8 513 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PANK2Q9BZ23 570 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 SPAG9O60271 1321 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 POLR3DP05423 398 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CEBPZQ03701 1054 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 C14orf80Q86SX3 495 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 JARID2Q92833 1246 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 PAPOLBQ9NRJ5 636 aaKnown RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 NDUFAB1O14561 156 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 GFAPP14136 432 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 ITGB3BPQ13352 177 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-221ENST00000641996 Q4G0T1 1027 aa4.04□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC84Q86UT8 332 aaPredicted RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms