RNA–Protein interactions for RNA: ENST00000641247.1

PHGDH-212, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-212ENST00000641247 NBPF11Q86T75 865 aa12.6□□□□□ -0.39
PHGDH-212ENST00000641247 MTMR14Q8NCE2 650 aa12.6□□□□□ -0.39
PHGDH-212ENST00000641247 DPF3Q92784 378 aa12.6□□□□□ -0.39
PHGDH-212ENST00000641247 OPTNQ96CV9 577 aa12.6□□□□□ -0.39
PHGDH-212ENST00000641247 F8W031 263 aaPredicted RBP12.59□□□□□ -0.39
PHGDH-212ENST00000641247 HOXB7P09629 217 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 CTSWP56202 376 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 CFAP100Q494V2 611 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.59□□□□□ -0.39
PHGDH-212ENST00000641247 CCDC146Q8IYE0 955 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 ANKRD13AQ8IZ07 590 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 LRCH3Q96II8 777 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 PNNQ9H307 717 aaKnown RBP12.59□□□□□ -0.39
PHGDH-212ENST00000641247 CD209Q9NNX6 404 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 CWC25Q9NXE8 425 aaPredicted RBP12.59□□□□□ -0.39
PHGDH-212ENST00000641247 ZNF804BA4D1E1 1349 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 IRS2Q9Y4H2 1338 aa12.59□□□□□ -0.39
PHGDH-212ENST00000641247 SPDYE2BA6NHP3 402 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 UNCXA6NJT0 531 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 IGKV5-2P06315 115 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 SPDYE6P0CI01 402 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 MMP14P50281 582 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 RASA3Q14644 834 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 TAF1CQ15572 869 aaPredicted RBP12.58□□□□□ -0.4
PHGDH-212ENST00000641247 SUPT20HL1Q3ZLR7 823 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 DIEXFQ68CQ4 756 aaKnown RBP12.58□□□□□ -0.4
PHGDH-212ENST00000641247 CDC5LQ99459 802 aaKnown RBP12.58□□□□□ -0.4
PHGDH-212ENST00000641247 METTL22Q9BUU2 404 aaPredicted RBP12.58□□□□□ -0.4
PHGDH-212ENST00000641247 VEZTQ9HBM0 779 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 ZFYVE28Q9HCC9 887 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 JAG2Q9Y219 1238 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 LEMD3Q9Y2U8 911 aa12.58□□□□□ -0.4
PHGDH-212ENST00000641247 CCL15-CCL14A0A0B4J2E2 113 aa12.57□□□□□ -0.4
PHGDH-212ENST00000641247 ELL2O00472 640 aaPredicted RBP12.57□□□□□ -0.4
PHGDH-212ENST00000641247 IREB2P48200 963 aaKnown RBP12.57□□□□□ -0.4
PHGDH-212ENST00000641247 CCL15Q16663 113 aa12.57□□□□□ -0.4
PHGDH-212ENST00000641247 TEPSINQ96N21 525 aa12.57□□□□□ -0.4
PHGDH-212ENST00000641247 PPP2R3BQ9Y5P8 575 aa12.57□□□□□ -0.4
PHGDH-212ENST00000641247 COL1A1P02452 1464 aaPredicted RBP12.57□□□□□ -0.4
PHGDH-212ENST00000641247 RANBP2P49792 3224 aaKnown RBP12.56□□□□□ -0.4
PHGDH-212ENST00000641247 HSP90B1P14625 803 aaKnown RBP12.56□□□□□ -0.4
PHGDH-212ENST00000641247 GOLGA2Q08379 1002 aa12.56□□□□□ -0.4
PHGDH-212ENST00000641247 MBIPQ9NS73 344 aa12.56□□□□□ -0.4
PHGDH-212ENST00000641247 ZBTB7BO15156 539 aaPredicted RBP12.55□□□□□ -0.4
PHGDH-212ENST00000641247 TLR2O60603 784 aa12.55□□□□□ -0.4
PHGDH-212ENST00000641247 TAF5LO75529 589 aa12.55□□□□□ -0.4
PHGDH-212ENST00000641247 LACTBP83111 547 aaPredicted RBP12.55□□□□□ -0.4
PHGDH-212ENST00000641247 LMOD3Q0VAK6 560 aa12.55□□□□□ -0.4
PHGDH-212ENST00000641247 ZSWIM8A7E2V4 1837 aa12.54□□□□□ -0.4
PHGDH-212ENST00000641247 CHRNDQ07001 517 aa12.54□□□□□ -0.4
PHGDH-212ENST00000641247 VGLL4Q14135 290 aa12.54□□□□□ -0.4
PHGDH-212ENST00000641247 CWF19L2Q2TBE0 894 aaKnown RBP12.54□□□□□ -0.4
PHGDH-212ENST00000641247 MAP3K2Q9Y2U5 619 aa12.54□□□□□ -0.4
PHGDH-212ENST00000641247 BTBD19C9JJ37 291 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 ZNF853P0CG23 659 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 GJA8P48165 433 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 GTF2A2P52657 109 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 MAP3K9P80192 1104 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 C8orf58Q8NAV2 365 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 HELBQ8NG08 1087 aaPredicted RBP12.53□□□□□ -0.4
PHGDH-212ENST00000641247 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.53□□□□□ -0.4
PHGDH-212ENST00000641247 ZNF70Q9UC06 446 aaPredicted RBP12.53□□□□□ -0.4
PHGDH-212ENST00000641247 STAP2Q9UGK3 403 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 CEP290O15078 2479 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 LAMB1P07942 1786 aa12.53□□□□□ -0.4
PHGDH-212ENST00000641247 H7C1W4 665 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 IL1R1P14778 569 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 ITGA6P23229 1130 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 IGHMBP2P38935 993 aaKnown RBP12.52□□□□□ -0.41
PHGDH-212ENST00000641247 MNX1P50219 401 aaPredicted RBP12.52□□□□□ -0.41
PHGDH-212ENST00000641247 ARHGEF6Q15052 776 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 C17orf99Q6UX52 265 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 TRIM47Q96LD4 638 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 TMEM39BQ9GZU3 492 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 ANKRD2Q9GZV1 360 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 TDRD3Q9H7E2 651 aaKnown RBP12.52□□□□□ -0.41
PHGDH-212ENST00000641247 CPA4Q9UI42 421 aa12.52□□□□□ -0.41
PHGDH-212ENST00000641247 PI4KAP2A4QPH2 592 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 MYO1BO43795 1136 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 GJB1P08034 283 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 CCL5P13501 91 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 OSBPP22059 807 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.41
PHGDH-212ENST00000641247 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 Q7L0L9 218 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 PI4KAP1Q8N8J0 262 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 SRRDQ9UH36 339 aa12.51□□□□□ -0.41
PHGDH-212ENST00000641247 NEURL1BA8MQ27 555 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 TCP10L2B9ZVM9 353 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 IRF6O14896 467 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 CSF1RP07333 972 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 CASP7P55210 303 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 GRIK5Q16478 980 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 C15orf52Q6ZUT6 534 aaKnown RBP12.5□□□□□ -0.41
PHGDH-212ENST00000641247 UBE3BQ7Z3V4 1068 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 COL25A1Q9BXS0 654 aaPredicted RBP12.5□□□□□ -0.41
PHGDH-212ENST00000641247 SNCAIPQ9Y6H5 919 aa12.5□□□□□ -0.41
PHGDH-212ENST00000641247 COL6A3P12111 3177 aa12.49□□□□□ -0.41
PHGDH-212ENST00000641247 SPDYE5A6NIY4 337 aa12.49□□□□□ -0.41
PHGDH-212ENST00000641247 GRK4P32298 578 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms