RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ANKRD36BQ8N2N9 1353 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 IGHDP01880 384 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF131P52739 623 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 BCAS4Q8TDM0 211 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 C17orf50Q8WW18 174 aa5.58□□□□□ -1.52
VPS13D-213ENST00000613099 JAKMIP2Q96AA8 810 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 MAML3Q96JK9 1138 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC77Q9BR77 488 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PALMDQ9NP74 551 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 NOB1Q9ULX3 412 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ENO4A6NNW6 628 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ATP6V0A1Q93050 837 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ORC3Q9UBD5 711 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PRXQ9BXM0 1461 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 MACROD2A1Z1Q3 448 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 FOSBP53539 338 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PRPF4BQ13523 1007 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 UBE4AQ14139 1066 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 DIXDC1Q155Q3 683 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 NUP88Q99567 741 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 KIF9Q9HAQ2 790 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CLTAP09496 248 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC113Q9H0I3 377 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 KMT5BQ4FZB7 885 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ABTB1Q969K4 478 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ARHGAP6O43182 974 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CLCN6P51797 869 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 VPS36Q86VN1 386 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 TMX3Q96JJ7 454 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 FGD4Q96M96 766 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC68Q9H2F9 335 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ZBTB16Q05516 673 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PPP1R7Q15435 360 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 KANK3Q6NY19 840 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PNMA2Q9UL42 364 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 EVI5O60447 810 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 RPSAP08865 295 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 SLC4A10Q6U841 1118 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 SREK1Q8WXA9 508 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PPIP5K1Q6PFW1 1433 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ANKRD62A6NC57 917 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 TMCC1O94876 653 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC184Q52MB2 194 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 RINLQ6ZS11 566 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 TTF2Q9UNY4 1162 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 TTC41PQ6P2S7 1318 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 KDM2BQ8NHM5 1336 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 IRX4P78413 519 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 ISM2Q6H9L7 571 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC63Q8NA47 563 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 TULP2O00295 520 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 NOP2P46087 812 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 DNAI2Q9GZS0 605 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 VCAM1P19320 739 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PDE1CQ14123 709 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PLCB4Q15147 1175 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 CARD6Q9BX69 1037 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 MOV10L1Q9BXT6 1211 aaKnown RBP5.57□□□□□ -1.52
VPS13D-213ENST00000613099 NKIRAS1Q9NYS0 192 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 HNRNPCP07910 306 aaKnown RBP eCLIP5.57□□□□□ -1.529e-6■■■□□ 16.8
VPS13D-213ENST00000613099 IQCDQ96DY2 449 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 EXOC1Q9NV70 894 aa5.57□□□□□ -1.52
VPS13D-213ENST00000613099 PDLIM2Q96JY6 352 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 INAQ16352 499 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 LMNAP02545 664 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 TMEM132AQ24JP5 1023 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 FAM204AQ9H8W3 233 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 SGSM2O43147 1006 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 XBP1P17861 261 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 B4GALNT2Q8NHY0 566 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 FGFR1OPO95684 399 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 BASP1P80723 227 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 TEX13AQ9BXU3 409 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 IQCA1LA6NCM1 817 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 OPHN1O60890 802 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 MFSD4BQ5TF39 518 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 SELENOOQ9BVL4 669 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 RARSP54136 660 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 RASAL2Q9UJF2 1139 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 ARHGAP5Q13017 1502 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 HNRNPH1P31943 449 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 LONRF2Q1L5Z9 754 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 BICD1Q96G01 975 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 CFAP73A6NFT4 308 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 TMED10P49755 219 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 ARHGAP22Q7Z5H3 698 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 PLCB1Q9NQ66 1216 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 YY1P25490 414 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 CCT6AP40227 531 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 PUF60Q9UHX1 559 aaKnown RBP5.56□□□□□ -1.52
VPS13D-213ENST00000613099 CNPY2Q9Y2B0 182 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 MAP3K7CLP57077 242 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 CCDC197Q8NCU1 140 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 TXLNGQ9NUQ3 528 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 ZNF148Q9UQR1 794 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 PHLPP2Q6ZVD8 1323 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 NEURL4Q96JN8 1562 aa5.56□□□□□ -1.52
VPS13D-213ENST00000613099 LCA5Q86VQ0 697 aa5.55□□□□□ -1.52
VPS13D-213ENST00000613099 FSIP1Q8NA03 581 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms