RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C3P01024 1663 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 ALKQ9UM73 1620 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 MAGI2Q86UL8 1455 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 CARMIL1Q5VZK9 1371 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 DHX15O43143 795 aaKnown RBP7.64□□□□□ -1.19
LINC00540-201ENST00000611481 COBLO75128 1261 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 TXKP42681 527 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 IRAK1P51617 712 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 KRTAP9-9Q9BYP9 154 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 KRTAP9-4Q9BYQ2 154 aa7.64□□□□□ -1.19
LINC00540-201ENST00000611481 HECW1Q76N89 1606 aa7.63□□□□□ -1.19
LINC00540-201ENST00000611481 C9orf84Q5VXU9 1444 aa7.63□□□□□ -1.19
LINC00540-201ENST00000611481 FKBP5Q13451 457 aaPredicted RBP7.63□□□□□ -1.19
LINC00540-201ENST00000611481 UBL7Q96S82 380 aaPredicted RBP7.63□□□□□ -1.19
LINC00540-201ENST00000611481 CEP41Q9BYV8 373 aa7.63□□□□□ -1.19
LINC00540-201ENST00000611481 CPS1P31327 1500 aa7.62□□□□□ -1.19
LINC00540-201ENST00000611481 ATP10AO60312 1499 aa7.62□□□□□ -1.19
LINC00540-201ENST00000611481 KIAA1324LA8MWY0 1029 aaPredicted RBP7.62□□□□□ -1.19
LINC00540-201ENST00000611481 LINC01387J3KSC0 135 aa7.62□□□□□ -1.19
LINC00540-201ENST00000611481 BRD2P25440 801 aaKnown RBP7.62□□□□□ -1.19
LINC00540-201ENST00000611481 TRIP4Q15650 581 aaPredicted RBP7.62□□□□□ -1.19
LINC00540-201ENST00000611481 ETFBKMTQ8IXQ9 262 aa7.62□□□□□ -1.19
LINC00540-201ENST00000611481 GALNT11Q8NCW6 608 aa7.62□□□□□ -1.19
LINC00540-201ENST00000611481 A6NJR5 290 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 MED26O95402 600 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 TGFB1P01137 390 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 RFX1P22670 979 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 CD68P34810 354 aaPredicted RBP7.61□□□□□ -1.19
LINC00540-201ENST00000611481 HYAL2Q12891 473 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 ACAD11Q709F0 780 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 OR13H1Q8NG92 308 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 PIK3R5Q8WYR1 880 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 SPACA7Q96KW9 195 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 FAM13BQ9NYF5 915 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 KIF27Q86VH2 1401 aa7.61□□□□□ -1.19
LINC00540-201ENST00000611481 SMNDC1O75940 238 aaKnown RBP eCLIP7.6□□□□□ -1.19
LINC00540-201ENST00000611481 SWI5Q1ZZU3 235 aa7.6□□□□□ -1.19
LINC00540-201ENST00000611481 UVSSAQ2YD98 709 aa7.6□□□□□ -1.19
LINC00540-201ENST00000611481 ARMC10Q8N2F6 343 aa7.6□□□□□ -1.19
LINC00540-201ENST00000611481 PRIMPOLQ96LW4 560 aa7.6□□□□□ -1.19
LINC00540-201ENST00000611481 FMNL2Q96PY5 1086 aa7.6□□□□□ -1.19
LINC00540-201ENST00000611481 OAS3Q9Y6K5 1087 aaKnown RBP7.6□□□□□ -1.19
LINC00540-201ENST00000611481 ATP10BO94823 1461 aa7.6□□□□□ -1.19
LINC00540-201ENST00000611481 WISP1O95388 367 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 CDC27P30260 824 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 GRIK1P39086 918 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 GP2P55259 537 aaKnown RBP7.59□□□□□ -1.19
LINC00540-201ENST00000611481 CFAP70Q5T0N1 1121 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 CEP135Q66GS9 1140 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 C16orf46Q6P387 395 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 INTS5Q6P9B9 1019 aaKnown RBP7.59□□□□□ -1.19
LINC00540-201ENST00000611481 ZDHHC13Q8IUH4 622 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 UTP4Q969X6 686 aaKnown RBP7.59□□□□□ -1.19
LINC00540-201ENST00000611481 LACRTQ9GZZ8 138 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 NOVA2Q9UNW9 492 aaKnown RBP7.59□□□□□ -1.19
LINC00540-201ENST00000611481 PLA2R1Q13018 1463 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 TCOF1Q13428 1488 aaKnown RBP7.59□□□□□ -1.19
LINC00540-201ENST00000611481 SHANK2Q9UPX8 1470 aa7.59□□□□□ -1.19
LINC00540-201ENST00000611481 ATP11AP98196 1134 aa7.58□□□□□ -1.2
LINC00540-201ENST00000611481 NFIAQ12857 509 aa7.58□□□□□ -1.2
LINC00540-201ENST00000611481 COL13A1Q5TAT6 717 aaPredicted RBP7.58□□□□□ -1.2
LINC00540-201ENST00000611481 TTC39BQ5VTQ0 682 aaPredicted RBP7.58□□□□□ -1.2
LINC00540-201ENST00000611481 FAM117BQ6P1L5 589 aa7.58□□□□□ -1.2
LINC00540-201ENST00000611481 TXNDC11Q6PKC3 985 aa7.58□□□□□ -1.2
LINC00540-201ENST00000611481 KLHL23Q8NBE8 558 aa7.58□□□□□ -1.2
LINC00540-201ENST00000611481 SAP130Q9H0E3 1048 aa7.58□□□□□ -1.2
LINC00540-201ENST00000611481 FNDC3AQ9Y2H6 1198 aaKnown RBP7.58□□□□□ -1.2
LINC00540-201ENST00000611481 ACIN1Q9UKV3 1341 aaKnown RBP7.57□□□□□ -1.2
LINC00540-201ENST00000611481 RAPGEF2Q9Y4G8 1499 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 PRMT3O60678 531 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 TAL1P17542 331 aaPredicted RBP7.57□□□□□ -1.2
LINC00540-201ENST00000611481 SCNN1AP37088 669 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 CDCA8Q53HL2 280 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 RNF43Q68DV7 783 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 COL26A1Q96A83 441 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 FAM46AQ96IP4 442 aaKnown RBP7.57□□□□□ -1.2
LINC00540-201ENST00000611481 C7orf69Q9H7B7 122 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 KCNK4Q9NYG8 393 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 CFAP74Q9C0B2 1584 aa7.57□□□□□ -1.2
LINC00540-201ENST00000611481 FSCN2O14926 492 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 CDC25BP30305 580 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 OCLNQ16625 522 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 DUOXA2Q1HG44 320 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 KIAA1211Q6ZU35 1233 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 TRIM42Q8IWZ5 723 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 MYRFLQ96LU7 910 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 DBNDD2Q9BQY9 259 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 CARD10Q9BWT7 1032 aa7.56□□□□□ -1.2
LINC00540-201ENST00000611481 SUPT6HQ7KZ85 1726 aaKnown RBP7.55□□□□□ -1.2
LINC00540-201ENST00000611481 SCAPERQ9BY12 1400 aa7.55□□□□□ -1.2
LINC00540-201ENST00000611481 FAM177BA6PVY3 158 aa7.55□□□□□ -1.2
LINC00540-201ENST00000611481 TM4SF5O14894 197 aa7.55□□□□□ -1.2
LINC00540-201ENST00000611481 YBX3P16989 372 aaKnown RBP eCLIP7.55□□□□□ -1.2
LINC00540-201ENST00000611481 SPINK2P20155 84 aa7.55□□□□□ -1.2
LINC00540-201ENST00000611481 FAM26DQ5JW98 314 aa7.55□□□□□ -1.2
LINC00540-201ENST00000611481 RASSF4Q9H2L5 321 aa7.55□□□□□ -1.2
LINC00540-201ENST00000611481 SETBP1Q9Y6X0 1596 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 NPATQ14207 1427 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 HMX2A2RU54 273 aa7.54□□□□□ -1.2
LINC00540-201ENST00000611481 TNFRSF10BO14763 440 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms