RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SCNN1DP51172 638 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 GTF2IP78347 998 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 ETNK1Q9HBU6 452 aa11.19□□□□□ -0.62
SMAD4-209ENST00000589941 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
SMAD4-209ENST00000589941 KDM2BQ8NHM5 1336 aa11.18□□□□□ -0.62
SMAD4-209ENST00000589941 DICER1Q9UPY3 1922 aaKnown RBP11.18□□□□□ -0.62
SMAD4-209ENST00000589941 ZEB1P37275 1124 aaPredicted RBP11.18□□□□□ -0.62
SMAD4-209ENST00000589941 CLN3Q13286 438 aa11.18□□□□□ -0.62
SMAD4-209ENST00000589941 PRDM10Q9NQV6 1147 aa11.18□□□□□ -0.62
SMAD4-209ENST00000589941 RNF181Q9P0P0 153 aa11.18□□□□□ -0.62
SMAD4-209ENST00000589941 THSD7BQ9C0I4 1608 aa11.17□□□□□ -0.62
SMAD4-209ENST00000589941 DPEP1P16444 411 aa11.17□□□□□ -0.62
SMAD4-209ENST00000589941 CLDN10P78369 228 aa11.17□□□□□ -0.62
SMAD4-209ENST00000589941 MLLT1Q03111 559 aaPredicted RBP11.17□□□□□ -0.62
SMAD4-209ENST00000589941 RNF217Q8TC41 542 aa11.17□□□□□ -0.62
SMAD4-209ENST00000589941 KIAA1024Q9UPX6 916 aa11.17□□□□□ -0.62
SMAD4-209ENST00000589941 ZBTB7BO15156 539 aaPredicted RBP11.16□□□□□ -0.62
SMAD4-209ENST00000589941 MMP10P09238 476 aa11.16□□□□□ -0.62
SMAD4-209ENST00000589941 RFX1P22670 979 aa11.16□□□□□ -0.62
SMAD4-209ENST00000589941 FLAD1Q8NFF5 587 aa11.16□□□□□ -0.62
SMAD4-209ENST00000589941 CNKSR1Q969H4 720 aa11.16□□□□□ -0.62
SMAD4-209ENST00000589941 XAGE2Q96GT9 111 aa11.16□□□□□ -0.62
SMAD4-209ENST00000589941 HRH3Q9Y5N1 445 aa11.16□□□□□ -0.62
SMAD4-209ENST00000589941 KDM6AO15550 1401 aaPredicted RBP11.16□□□□□ -0.62
SMAD4-209ENST00000589941 CENPJQ9HC77 1338 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-209ENST00000589941 AFDNP55196 1824 aaKnown RBP11.15□□□□□ -0.62
SMAD4-209ENST00000589941 TMEM229AB2RXF0 380 aa11.15□□□□□ -0.62
SMAD4-209ENST00000589941 RNF144AP50876 292 aaPredicted RBP11.15□□□□□ -0.62
SMAD4-209ENST00000589941 GDF10P55107 478 aa11.15□□□□□ -0.62
SMAD4-209ENST00000589941 CCDC82Q8N4S0 544 aa11.15□□□□□ -0.62
SMAD4-209ENST00000589941 ESYT1Q9BSJ8 1104 aa11.15□□□□□ -0.62
SMAD4-209ENST00000589941 LTBP1Q14766 1721 aa11.15□□□□□ -0.63
SMAD4-209ENST00000589941 TTC21AQ8NDW8 1320 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 CD163L1Q9NR16 1453 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 MAN1A2O60476 641 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 KCNA3P22001 575 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 LBX1P52954 281 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 NBPF1Q3BBV0 1214 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 OGFOD1Q8N543 542 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 LINC00116Q8NCU8 138 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 NLRP3Q96P20 1036 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 NSD3Q9BZ95 1437 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 CNTNAP1P78357 1384 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 USP31Q70CQ4 1352 aa11.14□□□□□ -0.63
SMAD4-209ENST00000589941 MYH14Q7Z406 1995 aaKnown RBP11.14□□□□□ -0.63
SMAD4-209ENST00000589941 CACNA1SQ13698 1873 aa11.13□□□□□ -0.63
SMAD4-209ENST00000589941 INHAP05111 366 aa11.13□□□□□ -0.63
SMAD4-209ENST00000589941 RASSF7Q02833 373 aa11.13□□□□□ -0.63
SMAD4-209ENST00000589941 CENPCQ03188 943 aa11.13□□□□□ -0.63
SMAD4-209ENST00000589941 CDCA8Q53HL2 280 aa11.13□□□□□ -0.63
SMAD4-209ENST00000589941 CCDC97Q96F63 343 aaPredicted RBP11.13□□□□□ -0.63
SMAD4-209ENST00000589941 LTV1Q96GA3 475 aaPredicted RBP11.13□□□□□ -0.63
SMAD4-209ENST00000589941 KTN1Q86UP2 1357 aaKnown RBP11.13□□□□□ -0.63
SMAD4-209ENST00000589941 CTCFP49711 727 aaPredicted RBP11.12□□□□□ -0.63
SMAD4-209ENST00000589941 RGS19P49795 217 aa11.12□□□□□ -0.63
SMAD4-209ENST00000589941 TRIM50Q86XT4 487 aa11.12□□□□□ -0.63
SMAD4-209ENST00000589941 NME9Q86XW9 330 aa11.12□□□□□ -0.63
SMAD4-209ENST00000589941 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.12□□□□□ -0.63
SMAD4-209ENST00000589941 DCAF5Q96JK2 942 aa11.12□□□□□ -0.63
SMAD4-209ENST00000589941 DNAAF2Q9NVR5 837 aaKnown RBP11.12□□□□□ -0.63
SMAD4-209ENST00000589941 ADAMTS7Q9UKP4 1686 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 DKK1O94907 266 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 HSPA8P11142 646 aaKnown RBP11.11□□□□□ -0.63
SMAD4-209ENST00000589941 SSFA2P28290 1259 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 GPC1P35052 558 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 TGFB2P61812 414 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 ZNF594Q96JF6 807 aaPredicted RBP11.11□□□□□ -0.63
SMAD4-209ENST00000589941 GRIP2Q9C0E4 1043 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 SERTAD1Q9UHV2 236 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 SERPINA10Q9UK55 444 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 SBNO2Q9Y2G9 1366 aa11.11□□□□□ -0.63
SMAD4-209ENST00000589941 CCDC85CA6NKD9 419 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 RASA1P20936 1047 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 ATP1A2P50993 1020 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.1□□□□□ -0.63
SMAD4-209ENST00000589941 CRTC2Q53ET0 693 aaPredicted RBP11.1□□□□□ -0.63
SMAD4-209ENST00000589941 CCDC102BQ68D86 513 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 PRICKLE2Q7Z3G6 844 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.1□□□□□ -0.63
SMAD4-209ENST00000589941 TPCN2Q8NHX9 752 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 ZCRB1Q8TBF4 217 aaKnown RBP11.1□□□□□ -0.63
SMAD4-209ENST00000589941 VRTNQ9H8Y1 702 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 ADAMTSL1Q8N6G6 1762 aa11.1□□□□□ -0.63
SMAD4-209ENST00000589941 FER1L6Q2WGJ9 1857 aa11.09□□□□□ -0.63
SMAD4-209ENST00000589941 ZNF831Q5JPB2 1677 aa11.09□□□□□ -0.63
SMAD4-209ENST00000589941 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.09□□□□□ -0.63
SMAD4-209ENST00000589941 ZNF358Q9NW07 568 aa11.09□□□□□ -0.63
SMAD4-209ENST00000589941 COL11A2P13942 1736 aaPredicted RBP11.09□□□□□ -0.63
SMAD4-209ENST00000589941 RHOQP17081 205 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 VEGFBP49765 207 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 ITPK1Q13572 414 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 LYSMD3Q7Z3D4 306 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 LARGE2Q8N3Y3 721 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 USHBP1Q8N6Y0 703 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 CASP8AP2Q9UKL3 1982 aa11.08□□□□□ -0.64
SMAD4-209ENST00000589941 NRXN2Q9P2S2 1712 aa11.07□□□□□ -0.64
SMAD4-209ENST00000589941 VEGFAP15692 232 aaPredicted RBP11.07□□□□□ -0.64
SMAD4-209ENST00000589941 POU4F2Q12837 409 aa11.07□□□□□ -0.64
SMAD4-209ENST00000589941 PTK7Q13308 1070 aa11.07□□□□□ -0.64
SMAD4-209ENST00000589941 TLR1Q15399 786 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms