RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 CLMNQ96JQ2 1002 aa14.39□□□□□ -0.11
CLN3-226ENST00000567160 COA1Q9GZY4 146 aa14.39□□□□□ -0.11
CLN3-226ENST00000567160 PTCH2Q9Y6C5 1203 aa14.39□□□□□ -0.11
CLN3-226ENST00000567160 ZNF646O15015 1829 aaPredicted RBP14.38□□□□□ -0.11
CLN3-226ENST00000567160 A0A0C4DFX4 3053 aa14.38□□□□□ -0.11
CLN3-226ENST00000567160 RANBP2P49792 3224 aaKnown RBP14.38□□□□□ -0.11
CLN3-226ENST00000567160 IREB2P48200 963 aaKnown RBP14.38□□□□□ -0.11
CLN3-226ENST00000567160 MNX1P50219 401 aaPredicted RBP14.38□□□□□ -0.11
CLN3-226ENST00000567160 HDGFL1Q5TGJ6 251 aa14.38□□□□□ -0.11
CLN3-226ENST00000567160 MXD3Q9BW11 206 aa14.38□□□□□ -0.11
CLN3-226ENST00000567160 DBF4Q9UBU7 674 aaPredicted RBP14.38□□□□□ -0.11
CLN3-226ENST00000567160 FZD1Q9UP38 647 aa14.38□□□□□ -0.11
CLN3-226ENST00000567160 ECM29Q5VYK3 1845 aa14.38□□□□□ -0.11
CLN3-226ENST00000567160 TESPA1A2RU30 521 aaPredicted RBP14.37□□□□□ -0.11
CLN3-226ENST00000567160 PDE8AO60658 829 aa14.37□□□□□ -0.11
CLN3-226ENST00000567160 VAMP4O75379 141 aa14.37□□□□□ -0.11
CLN3-226ENST00000567160 WDHD1O75717 1129 aaPredicted RBP14.37□□□□□ -0.11
CLN3-226ENST00000567160 CDC5LQ99459 802 aaKnown RBP14.37□□□□□ -0.11
CLN3-226ENST00000567160 HYPKQ9NX55 129 aa14.37□□□□□ -0.11
CLN3-226ENST00000567160 COL6A3P12111 3177 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 MYO1BO43795 1136 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 MYCP01106 439 aaPredicted RBP14.36□□□□□ -0.11
CLN3-226ENST00000567160 KIF22Q14807 665 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 DLGAP5Q15398 846 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 TTLL5Q6EMB2 1281 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 KIAA0825Q8IV33 1275 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 ANKRD13AQ8IZ07 590 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 HTATIP2Q9BUP3 242 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 ZFYVE28Q9HCC9 887 aa14.36□□□□□ -0.11
CLN3-226ENST00000567160 A0A1W2PPC1 479 aa14.35□□□□□ -0.11
CLN3-226ENST00000567160 HOXB7P09629 217 aa14.35□□□□□ -0.11
CLN3-226ENST00000567160 TAF1CQ15572 869 aaPredicted RBP14.35□□□□□ -0.11
CLN3-226ENST00000567160 NKX2-3Q8TAU0 364 aa14.35□□□□□ -0.11
CLN3-226ENST00000567160 ZBED3Q96IU2 234 aaPredicted RBP14.35□□□□□ -0.11
CLN3-226ENST00000567160 PTPN18Q99952 460 aa14.35□□□□□ -0.11
CLN3-226ENST00000567160 NR2E3Q9Y5X4 410 aa14.35□□□□□ -0.11
CLN3-226ENST00000567160 SSC5DA1L4H1 1573 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 GNRH1P01148 92 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 PCCAP05165 728 aaPredicted RBP14.34□□□□□ -0.11
CLN3-226ENST00000567160 CCT4P50991 539 aaKnown RBP14.34□□□□□ -0.11
CLN3-226ENST00000567160 CAP1Q01518 475 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 RIC3Q7Z5B4 369 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 SH3TC2Q8TF17 1288 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 CCDC85AQ96PX6 553 aaPredicted RBP14.34□□□□□ -0.11
CLN3-226ENST00000567160 ZNF804BA4D1E1 1349 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 SPEF2Q9C093 1822 aa14.34□□□□□ -0.11
CLN3-226ENST00000567160 CT47B1P0C2W7 299 aaPredicted RBP14.33□□□□□ -0.12
CLN3-226ENST00000567160 GJA5P36382 358 aa14.33□□□□□ -0.12
CLN3-226ENST00000567160 PRMT2P55345 433 aa14.33□□□□□ -0.12
CLN3-226ENST00000567160 CCDC30Q5VVM6 783 aa14.33□□□□□ -0.12
CLN3-226ENST00000567160 CCDC191Q8NCU4 936 aa14.33□□□□□ -0.12
CLN3-226ENST00000567160 BSDC1Q9NW68 430 aaPredicted RBP14.33□□□□□ -0.12
CLN3-226ENST00000567160 MINPP1Q9UNW1 487 aa14.33□□□□□ -0.12
CLN3-226ENST00000567160 WTIPA6NIX2 430 aaPredicted RBP14.32□□□□□ -0.12
CLN3-226ENST00000567160 CENPBP07199 599 aaPredicted RBP14.32□□□□□ -0.12
CLN3-226ENST00000567160 MTMR14Q8NCE2 650 aa14.32□□□□□ -0.12
CLN3-226ENST00000567160 OPTNQ96CV9 577 aa14.32□□□□□ -0.12
CLN3-226ENST00000567160 STK31Q9BXU1 1019 aa14.32□□□□□ -0.12
CLN3-226ENST00000567160 PRO3102Q9H379 93 aa14.32□□□□□ -0.12
CLN3-226ENST00000567160 LEMD3Q9Y2U8 911 aa14.32□□□□□ -0.12
CLN3-226ENST00000567160 MYH3P11055 1940 aa14.32□□□□□ -0.12
CLN3-226ENST00000567160 OTOFQ9HC10 1997 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 USP2O75604 605 aaPredicted RBP14.31□□□□□ -0.12
CLN3-226ENST00000567160 GTF2A2P52657 109 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 RARSP54136 660 aaKnown RBP14.31□□□□□ -0.12
CLN3-226ENST00000567160 GTF2IP78347 998 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 SSH1Q8WYL5 1049 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 ELP3Q9H9T3 547 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 SMC4Q9NTJ3 1288 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 CWC25Q9NXE8 425 aaPredicted RBP14.31□□□□□ -0.12
CLN3-226ENST00000567160 RCAN3Q9UKA8 241 aa14.31□□□□□ -0.12
CLN3-226ENST00000567160 CCL15-CCL14A0A0B4J2E2 113 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 CTSWP56202 376 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 LACTBP83111 547 aaPredicted RBP14.3□□□□□ -0.12
CLN3-226ENST00000567160 CCL15Q16663 113 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 NBPF12Q5TAG4 269 aaPredicted RBP14.3□□□□□ -0.12
CLN3-226ENST00000567160 MS4A4AQ96JQ5 239 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 MYD88Q99836 296 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 CHMP4AQ9BY43 222 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 VEZTQ9HBM0 779 aa14.3□□□□□ -0.12
CLN3-226ENST00000567160 BCAR3O75815 825 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 SLC4A2P04920 1241 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 TNFAIP1Q13829 316 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 ALDH1L2Q3SY69 923 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 BRI3BPQ8WY22 251 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 SHISA4Q96DD7 197 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 ANKRD2Q9GZV1 360 aa14.29□□□□□ -0.12
CLN3-226ENST00000567160 CLRN2A0PK11 232 aa14.28□□□□□ -0.12
CLN3-226ENST00000567160 ZBTB7BO15156 539 aaPredicted RBP14.28□□□□□ -0.12
CLN3-226ENST00000567160 TLR2O60603 784 aa14.28□□□□□ -0.12
CLN3-226ENST00000567160 IGHMBP2P38935 993 aaKnown RBP14.28□□□□□ -0.12
CLN3-226ENST00000567160 GJA8P48165 433 aa14.28□□□□□ -0.12
CLN3-226ENST00000567160 TXNRD3Q86VQ6 643 aa14.28□□□□□ -0.12
CLN3-226ENST00000567160 MRPL50Q8N5N7 158 aaKnown RBP14.28□□□□□ -0.12
CLN3-226ENST00000567160 ZCCHC17Q9NP64 241 aaKnown RBP14.28□□□□□ -0.12
CLN3-226ENST00000567160 SPDYE2BA6NHP3 402 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 GJB1P08034 283 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 SPDYE6P0CI01 402 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 HOXD10P28358 340 aa14.27□□□□□ -0.13
CLN3-226ENST00000567160 KCNJ4P48050 445 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms