RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 HMGB1P09429 215 aaKnown RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 SF3A1Q15459 793 aaKnown RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 CNNM1Q9NRU3 951 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 ZHX1Q9UKY1 873 aaPredicted RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 ARFGEF2Q9Y6D5 1785 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 RIOK3O14730 519 aaKnown RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 GPAA1O43292 621 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 KINO60870 393 aaKnown RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 ITGA6P23229 1130 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 MARCKSP29966 332 aaPredicted RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 MCAMP43121 646 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 SNW1Q13573 536 aaKnown RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 ZNF710Q8N1W2 664 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 CACTINQ8WUQ7 758 aaKnown RBP15.78■□□□□ 0.12
CLK3-215ENST00000564353 SDF4Q9BRK5 362 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 PCDHA7Q9UN72 937 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 BECN2A8MW95 431 aa15.77■□□□□ 0.12
CLK3-215ENST00000564353 CPLX1O14810 134 aa15.77■□□□□ 0.12
CLK3-215ENST00000564353 TERF1P54274 439 aa15.77■□□□□ 0.12
CLK3-215ENST00000564353 PTPN21Q16825 1174 aa15.77■□□□□ 0.12
CLK3-215ENST00000564353 IMMTQ16891 758 aaKnown RBP15.77■□□□□ 0.12
CLK3-215ENST00000564353 SLC9C2Q5TAH2 1124 aa15.77■□□□□ 0.12
CLK3-215ENST00000564353 KIF6Q6ZMV9 814 aa15.77■□□□□ 0.11
CLK3-215ENST00000564353 PHKBQ93100 1093 aa15.77■□□□□ 0.11
CLK3-215ENST00000564353 ORC3Q9UBD5 711 aaPredicted RBP15.77■□□□□ 0.11
CLK3-215ENST00000564353 COL18A1P39060 1754 aa15.77■□□□□ 0.11
CLK3-215ENST00000564353 ADAMTS7Q9UKP4 1686 aa15.77■□□□□ 0.11
CLK3-215ENST00000564353 ERVV-2B6SEH9 535 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 KIF28PB7ZC32 967 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 NDUFA8P51970 172 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 ANTXR2P58335 489 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 NAA30Q147X3 362 aaPredicted RBP15.76■□□□□ 0.11
CLK3-215ENST00000564353 ATP2B3Q16720 1220 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 ZSCAN25Q6NSZ9 544 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 RALYLQ86SE5 291 aaKnown RBP15.76■□□□□ 0.11
CLK3-215ENST00000564353 CCDC82Q8N4S0 544 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 AOPEPQ8N6M6 819 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 C8orf76Q96K31 380 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 LMTK3Q96Q04 1460 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 SPTLC3Q9NUV7 552 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 TRMT1Q9NXH9 659 aaKnown RBP15.76■□□□□ 0.11
CLK3-215ENST00000564353 ZNF213O14771 459 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 HMGN5P82970 282 aaKnown RBP15.76■□□□□ 0.11
CLK3-215ENST00000564353 STK38Q15208 465 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 MICU3Q86XE3 530 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 ISCA1Q9BUE6 129 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 RCOR1Q9UKL0 485 aa15.76■□□□□ 0.11
CLK3-215ENST00000564353 USP27XA6NNY8 438 aa15.75■□□□□ 0.11
CLK3-215ENST00000564353 NAA16Q6N069 864 aaPredicted RBP15.75■□□□□ 0.11
CLK3-215ENST00000564353 XIRP1Q702N8 1843 aaKnown RBP15.75■□□□□ 0.11
CLK3-215ENST00000564353 PHKA1P46020 1223 aa15.75■□□□□ 0.11
CLK3-215ENST00000564353 PLA2G4DQ86XP0 818 aa15.75■□□□□ 0.11
CLK3-215ENST00000564353 LLPHQ9BRT6 129 aaKnown RBP15.75■□□□□ 0.11
CLK3-215ENST00000564353 PIH1D3Q9NQM4 214 aaKnown RBP15.75■□□□□ 0.11
CLK3-215ENST00000564353 TRMT112Q9UI30 125 aaKnown RBP15.75■□□□□ 0.11
CLK3-215ENST00000564353 HPS5Q9UPZ3 1129 aa15.75■□□□□ 0.11
CLK3-215ENST00000564353 B4E1Z4 1266 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 IQCB1Q15051 598 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 RBM43Q6ZSC3 357 aaKnown RBP15.74■□□□□ 0.11
CLK3-215ENST00000564353 TBC1D10CQ8IV04 446 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 TDRD7Q8NHU6 1098 aaKnown RBP15.74■□□□□ 0.11
CLK3-215ENST00000564353 BCL2L12Q9HB09 334 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 IQSEC3Q9UPP2 1182 aaPredicted RBP15.74■□□□□ 0.11
CLK3-215ENST00000564353 ZBTB1Q9Y2K1 713 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 SOS2Q07890 1332 aaPredicted RBP15.74■□□□□ 0.11
CLK3-215ENST00000564353 ATG3Q9NT62 314 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 WWC3Q9ULE0 1092 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 KIF3AQ9Y496 699 aa15.74■□□□□ 0.11
CLK3-215ENST00000564353 SALL1Q9NSC2 1324 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 CYB5R4Q7L1T6 521 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 CMTR1Q8N1G2 835 aaKnown RBP15.73■□□□□ 0.11
CLK3-215ENST00000564353 ZNF396Q96N95 335 aaPredicted RBP15.73■□□□□ 0.11
CLK3-215ENST00000564353 SLC4A9Q96Q91 983 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 ZKSCAN3Q9BRR0 538 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 NBPF3Q9H094 633 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 GPR108Q9NPR9 543 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 TOMM22Q9NS69 142 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 BTG4Q9NY30 223 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 STRCQ7RTU9 1775 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 FAM160A1Q05DH4 1040 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 TPD52L1Q16890 204 aaPredicted RBP15.73■□□□□ 0.11
CLK3-215ENST00000564353 DPCR1Q3MIW9 517 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 RRP12Q5JTH9 1297 aaKnown RBP15.73■□□□□ 0.11
CLK3-215ENST00000564353 TTLL11Q8NHH1 800 aa15.73■□□□□ 0.11
CLK3-215ENST00000564353 ZNF274Q96GC6 653 aaPredicted RBP15.73■□□□□ 0.11
CLK3-215ENST00000564353 SPDYE4A6NLX3 237 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 CIAO1O76071 339 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 HSP90AA4PQ58FG1 418 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 PLCD3Q8N3E9 789 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 APPBP2Q92624 585 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 AGXT2Q9BYV1 514 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 AKAP2Q9Y2D5 859 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 IRS4O14654 1257 aaPredicted RBP15.72■□□□□ 0.11
CLK3-215ENST00000564353 CTDSPL2Q05D32 466 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 CHAF1AQ13111 956 aaPredicted RBP15.72■□□□□ 0.11
CLK3-215ENST00000564353 STX1AQ16623 288 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 SPECC1Q5M775 1068 aa15.72■□□□□ 0.11
CLK3-215ENST00000564353 DHX40Q8IX18 779 aaKnown RBP15.72■□□□□ 0.11
CLK3-215ENST00000564353 MB21D2Q8IYB1 491 aaPredicted RBP15.72■□□□□ 0.11
CLK3-215ENST00000564353 ZBTB38Q8NAP3 1195 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms