RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 HAUS1Q96CS2 278 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 OLFM3Q96PB7 478 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 MOV10L1Q9BXT6 1211 aaKnown RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 PCDHB15Q9Y5E8 787 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 PCF11O94913 1555 aaKnown RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 LMOD2Q6P5Q4 547 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 NME8Q8N427 588 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 KLC4Q9NSK0 619 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 THOC2Q8NI27 1593 aaKnown RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 MARCH6O60337 910 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 MAP4K4O95819 1239 aaPredicted RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 LMNAP02545 664 aaKnown RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 MMP14P50281 582 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 LAMB3Q13751 1172 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 ALS2CLQ60I27 953 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 FAF1Q9UNN5 650 aaPredicted RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 WASHC4Q2M389 1173 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 CCDC63Q8NA47 563 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 CCDC96Q2M329 555 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 ARMCX6Q7L4S7 300 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 TMTC1Q8IUR5 882 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 PARP9Q8IXQ6 854 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 FBXO41Q8TF61 875 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 CNOT10Q9H9A5 744 aaKnown RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 MTUS1Q9ULD2 1270 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 MAP3K21Q5TCX8 1036 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 MIS18AQ9NYP9 233 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 PPP1R1BQ9UD71 204 aaPredicted RBP7.05□□□□□ -1.28
CLK3-212ENST00000563418 MACROD2A1Z1Q3 448 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 ANKRD62A6NC57 917 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 VPS53Q5VIR6 699 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 FYB2Q5VWT5 728 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 CCDC68Q9H2F9 335 aa7.05□□□□□ -1.28
CLK3-212ENST00000563418 CADPSQ9ULU8 1353 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 KCNJ6P48051 423 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 TRIM68Q6AZZ1 485 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 KIF1BPQ96EK5 621 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 LZTFL1Q9NQ48 299 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 EPRSP07814 1512 aaKnown RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 AMOTQ4VCS5 1084 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 ANKRD24Q8TF21 1146 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 DDX58O95786 925 aaKnown RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 TRIM21P19474 475 aaKnown RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 CC2D1AQ6P1N0 951 aaPredicted RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 HOOK2Q96ED9 719 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 VIPAS39Q9H9C1 493 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 APOBRQ0VD83 1088 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 ZGPATQ8N5A5 531 aaKnown RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 SSH1Q8WYL5 1049 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 C8orf76Q96K31 380 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 MTRF1LQ9UGC7 380 aaKnown RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 CETN2P41208 172 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 TMEM87AQ8NBN3 555 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 ELL2O00472 640 aaPredicted RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 SURF6O75683 361 aaKnown RBP7.04□□□□□ -1.28
CLK3-212ENST00000563418 RAB3IL1Q8TBN0 382 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 LMBR1Q8WVP7 490 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 CFAP73A6NFT4 308 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 TULP2O00295 520 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 SYKP43405 635 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 KIAA0753Q2KHM9 967 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 NBPF14Q5TI25 921 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 CARD10Q9BWT7 1032 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 PLVAPQ9BX97 442 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 STK3Q13188 491 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 NKIRAS1Q9NYS0 192 aa7.04□□□□□ -1.28
CLK3-212ENST00000563418 HPDP32754 393 aaPredicted RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 UBE4AQ14139 1066 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 EGFL6Q8IUX8 553 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 CCDC197Q8NCU1 140 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 KLHDC4Q8TBB5 520 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 STXBP3O00186 592 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 MCUR1Q96AQ8 359 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 A0A1W2PRG0 241 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 COG7P83436 770 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 ISM2Q6H9L7 571 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 KLHL23Q8NBE8 558 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 SELENOSQ9BQE4 189 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 ESYT1Q9BSJ8 1104 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 TRIM66O15016 1216 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 BMP15O95972 392 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 ZC3H6P61129 1189 aaKnown RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 GRAMD4Q6IC98 578 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 CWC27Q6UX04 472 aaKnown RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 U3KPZ7 1027 aaPredicted RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 SPECC1L-ADORA2AF8WAN1 911 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 TAF11Q15544 211 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.03□□□□□ -1.28
CLK3-212ENST00000563418 CFTRP13569 1480 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 CDC23Q9UJX2 597 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 N4BP3O15049 544 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 RPSAP08865 295 aaKnown RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 IFT88Q13099 833 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 INF2Q27J81 1249 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 TSR2Q969E8 191 aaKnown RBP7.03□□□□□ -1.28
CLK3-212ENST00000563418 TXLNGQ9NUQ3 528 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 PPP1R9AQ9ULJ8 1098 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 RGS12O14924 1447 aa7.03□□□□□ -1.28
CLK3-212ENST00000563418 ABCC2Q92887 1545 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms