RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 A0A1B0GUL7 405 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 N4BP3O15049 544 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 CALML3P27482 149 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 MCM7P33993 719 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 ACTN2P35609 894 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 PAFAH1B1P43034 410 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 LRSAM1Q6UWE0 723 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 CCDC91Q7Z6B0 441 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 IL27Q8NEV9 243 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 ALS2CR12Q96Q35 445 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 H7C1D1 291 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 ALDH1B1P30837 517 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 CASQ1P31415 396 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 PIK3C2GO75747 1445 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 VAMP4O75379 141 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 HARSP12081 509 aaKnown RBP9.36□□□□□ -0.91
SYNE2-220ENST00000555612 GNA11P29992 359 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 KRT2P35908 639 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 APOBRQ0VD83 1088 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 DLGAP5Q15398 846 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 HSP90AA4PQ58FG1 418 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 KLHDC4Q8TBB5 520 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 ZSCAN16Q9H4T2 348 aaPredicted RBP9.36□□□□□ -0.91
SYNE2-220ENST00000555612 BRPF3Q9ULD4 1205 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 PZPP20742 1482 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 TTC41PQ6P2S7 1318 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 TRIM75PA6NK02 468 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 IFFO1Q0D2I5 559 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 UBXN4Q92575 508 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 HOOK2Q96ED9 719 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 PUS7Q96PZ0 661 aaKnown RBP9.36□□□□□ -0.91
SYNE2-220ENST00000555612 CHMP2AO43633 222 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 DPY19L2Q6NUT2 758 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 DHX58Q96C10 678 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 PLIN2Q99541 437 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 AATFQ9NY61 560 aaKnown RBP eCLIP9.36□□□□□ -0.91
SYNE2-220ENST00000555612 ZMYM4Q5VZL5 1548 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 PTPDC1A2A3K4 754 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 URI1O94763 535 aaPredicted RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 KIAA0754O94854 1291 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 SMCR8Q8TEV9 937 aaPredicted RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 CARD14Q9BXL6 1004 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 TBC1D2Q9BYX2 928 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 GJC1P36383 396 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 G2E3Q7L622 706 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 CPXCR1Q8N123 301 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 FNBP4Q8N3X1 1017 aaPredicted RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 TMX3Q96JJ7 454 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 CCDC172P0C7W6 258 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 MYCLP12524 364 aaPredicted RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 RXRBP28702 533 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 RBM10P98175 930 aaKnown RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 HDAC1Q13547 482 aaPredicted RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 CEP85Q6P2H3 762 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 TRPC5Q9UL62 973 aaPredicted RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 PTPN14Q15678 1187 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 TNPO1Q92973 898 aaKnown RBP9.35□□□□□ -0.91
SYNE2-220ENST00000555612 XAGE2Q96GT9 111 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 PLCD4Q9BRC7 762 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 CRACR2AQ9BSW2 395 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 HOMER2Q9NSB8 354 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 TNNQ9UQP3 1299 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 CCDC171Q6TFL3 1326 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 GOLGA6L7A0A1B0GV03 622 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 AKR1B10O60218 316 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 PRDM1O75626 825 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 C2CD5Q86YS7 1000 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 WDR66Q8TBY9 1149 aa9.35□□□□□ -0.91
SYNE2-220ENST00000555612 IRX3P78415 501 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-220ENST00000555612 MTERF4Q7Z6M4 381 aaKnown RBP9.34□□□□□ -0.91
SYNE2-220ENST00000555612 SSX2IPQ9Y2D8 614 aa9.34□□□□□ -0.91
SYNE2-220ENST00000555612 ABCA8O94911 1581 aa9.34□□□□□ -0.91
SYNE2-220ENST00000555612 NOP56O00567 594 aaKnown RBP9.34□□□□□ -0.91
SYNE2-220ENST00000555612 TRMT1Q9NXH9 659 aaKnown RBP9.34□□□□□ -0.91
SYNE2-220ENST00000555612 POLR3AO14802 1390 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-220ENST00000555612 USP25Q9UHP3 1055 aa9.34□□□□□ -0.91
SYNE2-220ENST00000555612 MRPS9P82933 396 aaKnown RBP9.34□□□□□ -0.91
SYNE2-220ENST00000555612 PCDHB15Q9Y5E8 787 aa9.34□□□□□ -0.91
SYNE2-220ENST00000555612 NSMFQ6X4W1 530 aa9.34□□□□□ -0.91
SYNE2-220ENST00000555612 HLTFQ14527 1009 aaKnown RBP eCLIP9.33□□□□□ -0.92
SYNE2-220ENST00000555612 MAPKAPK5Q8IW41 473 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 FLAD1Q8NFF5 587 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 KCNG4Q8TDN1 519 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 TRIM37O94972 964 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 ZSCAN22P10073 491 aaPredicted RBP9.33□□□□□ -0.92
SYNE2-220ENST00000555612 HS2ST1Q7LGA3 356 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 ZNF496Q96IT1 587 aaPredicted RBP9.33□□□□□ -0.92
SYNE2-220ENST00000555612 TMEM2Q9UHN6 1383 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 PSMA7O14818 248 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 ZBED4O75132 1171 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 LTKP29376 864 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 LETM2Q2VYF4 491 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 CCDC129Q6ZRS4 1044 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 TAOK3Q9H2K8 898 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 DNMT1P26358 1616 aaKnown RBP9.33□□□□□ -0.92
SYNE2-220ENST00000555612 SOS1Q07889 1333 aaPredicted RBP9.33□□□□□ -0.92
SYNE2-220ENST00000555612 RFX1P22670 979 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 GTF2IP78347 998 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 FAM182BQ5T319 152 aa9.33□□□□□ -0.92
SYNE2-220ENST00000555612 ZNF772Q68DY9 489 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms