RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 RASGRF1Q13972 1273 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 SCARF1Q14162 830 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 STRIP1Q5VSL9 837 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 C9orf131Q5VYM1 1079 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 TTLL5Q6EMB2 1281 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 PI4K2BQ8TCG2 481 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 HAUS7Q99871 368 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 BOLA2Q9H3K6 86 aa12.44□□□□□ -0.42
SYNE2-215ENST00000554997 IQSEC3Q9UPP2 1182 aaPredicted RBP12.44□□□□□ -0.42
SYNE2-215ENST00000554997 CACNA1SQ13698 1873 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 FER1L6Q2WGJ9 1857 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 USP17L3A6NCW0 530 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 USP17L4A6NCW7 530 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 VIL1P09327 827 aaKnown RBP12.43□□□□□ -0.42
SYNE2-215ENST00000554997 FKBP1AP62942 108 aaKnown RBP12.43□□□□□ -0.42
SYNE2-215ENST00000554997 GTF2IP78347 998 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 CXCL9Q07325 125 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 TNIP1Q15025 636 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 USP17L1Q7RTZ2 530 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 WDR66Q8TBY9 1149 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 RNF181Q9P0P0 153 aa12.43□□□□□ -0.42
SYNE2-215ENST00000554997 IGSF3O75054 1194 aa12.42□□□□□ -0.42
SYNE2-215ENST00000554997 CYP2E1P05181 493 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-215ENST00000554997 ZAP70P43403 619 aa12.42□□□□□ -0.42
SYNE2-215ENST00000554997 EIF6P56537 245 aaKnown RBP12.42□□□□□ -0.42
SYNE2-215ENST00000554997 TSHZ3Q63HK5 1081 aa12.42□□□□□ -0.42
SYNE2-215ENST00000554997 TBC1D22AQ8WUA7 517 aa12.42□□□□□ -0.42
SYNE2-215ENST00000554997 SNRKQ9NRH2 765 aa12.42□□□□□ -0.42
SYNE2-215ENST00000554997 SALL1Q9NSC2 1324 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 RAD17O75943 681 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 RGS3P49796 1198 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 CHAF1AQ13111 956 aaPredicted RBP12.41□□□□□ -0.42
SYNE2-215ENST00000554997 TTF1Q15361 905 aaPredicted RBP12.41□□□□□ -0.42
SYNE2-215ENST00000554997 DACT2Q5SW24 774 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 CIAPIN1Q6FI81 312 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 PI16Q6UXB8 463 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 SKAP1Q86WV1 359 aa12.41□□□□□ -0.42
SYNE2-215ENST00000554997 ZC3H4Q9UPT8 1303 aaKnown RBP12.4□□□□□ -0.42
SYNE2-215ENST00000554997 PSMD14O00487 310 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 MFSD14BQ5SR56 506 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 SPTY2D1Q68D10 685 aaPredicted RBP12.4□□□□□ -0.42
SYNE2-215ENST00000554997 DPY19L2Q6NUT2 758 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 TICAM2Q86XR7 235 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 ZGPATQ8N5A5 531 aaKnown RBP12.4□□□□□ -0.42
SYNE2-215ENST00000554997 MRIQ9BWK5 157 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 PAG1Q9NWQ8 432 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 SUGT1Q9Y2Z0 365 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 A0A1B0GUL6 1792 aa12.4□□□□□ -0.42
SYNE2-215ENST00000554997 COL4A5P29400 1685 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 GOLIM4O00461 696 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 MMP14P50281 582 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 TTC22Q5TAA0 569 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 RSBN1LQ6PCB5 846 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-215ENST00000554997 TBC1D9Q6ZT07 1266 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 GPC2Q8N158 579 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 AGBL3Q8NEM8 1001 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 EVI5LQ96CN4 794 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 GMLQ99445 158 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 DNAJC2Q99543 621 aaKnown RBP12.39□□□□□ -0.43
SYNE2-215ENST00000554997 ANTXR1Q9H6X2 564 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 JAG2Q9Y219 1238 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 NDUFB9Q9Y6M9 179 aa12.39□□□□□ -0.43
SYNE2-215ENST00000554997 MYO3BQ8WXR4 1341 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 MAP4K4O95819 1239 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-215ENST00000554997 RPS12P25398 132 aaKnown RBP12.38□□□□□ -0.43
SYNE2-215ENST00000554997 TMED8Q6PL24 325 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-215ENST00000554997 CERS5Q8N5B7 392 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 DPF2Q92785 391 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 FBXW7Q969H0 707 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 EDC3Q96F86 508 aaKnown RBP12.38□□□□□ -0.43
SYNE2-215ENST00000554997 MXD3Q9BW11 206 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 PIH1D3Q9NQM4 214 aaKnown RBP12.38□□□□□ -0.43
SYNE2-215ENST00000554997 LRP2BPQ9P2M1 347 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 ABCF2Q9UG63 623 aa12.38□□□□□ -0.43
SYNE2-215ENST00000554997 ARAP2Q8WZ64 1704 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 GLTPD2A6NH11 291 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 TRIM6-TRIM34B2RNG4 842 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 LDHBP07195 334 aaKnown RBP12.37□□□□□ -0.43
SYNE2-215ENST00000554997 GSPT1P15170 499 aaKnown RBP12.37□□□□□ -0.43
SYNE2-215ENST00000554997 MAP3K12Q12852 859 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 BMP2KLQ5H9B9 411 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 ERICH6Q7L0X2 663 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 CNTROBQ8N137 903 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 KBTBD3Q8NAB2 608 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 ZBTB12Q9Y330 459 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-215ENST00000554997 GJA3Q9Y6H8 435 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 ZNF541Q9H0D2 1346 aa12.37□□□□□ -0.43
SYNE2-215ENST00000554997 COL1A1P02452 1464 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-215ENST00000554997 DDNO94850 711 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-215ENST00000554997 SDSP20132 328 aa12.36□□□□□ -0.43
SYNE2-215ENST00000554997 HDLBPQ00341 1268 aaKnown RBP12.36□□□□□ -0.43
SYNE2-215ENST00000554997 GRIK5Q16478 980 aa12.36□□□□□ -0.43
SYNE2-215ENST00000554997 LRRFIP1Q32MZ4 808 aaKnown RBP12.36□□□□□ -0.43
SYNE2-215ENST00000554997 ZSCAN25Q6NSZ9 544 aa12.36□□□□□ -0.43
SYNE2-215ENST00000554997 RILPL2Q969X0 211 aa12.36□□□□□ -0.43
SYNE2-215ENST00000554997 FAM163AQ96GL9 167 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-215ENST00000554997 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.36□□□□□ -0.43
SYNE2-215ENST00000554997 RAI14Q9P0K7 980 aa12.36□□□□□ -0.43
SYNE2-215ENST00000554997 IDH1O75874 414 aaKnown RBP12.35□□□□□ -0.43
SYNE2-215ENST00000554997 LDHCP07864 332 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms