RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.05■□□□□ 0.32
ACTN1-211ENST00000553882 PIGBQ92521 554 aa17.05■□□□□ 0.32
ACTN1-211ENST00000553882 ZNF396Q96N95 335 aaPredicted RBP17.05■□□□□ 0.32
ACTN1-211ENST00000553882 GREM2Q9H772 168 aa17.05■□□□□ 0.32
ACTN1-211ENST00000553882 CTNNA3Q9UI47 895 aa17.05■□□□□ 0.32
ACTN1-211ENST00000553882 DENND2AQ9ULE3 1009 aa17.05■□□□□ 0.32
ACTN1-211ENST00000553882 GPAA1O43292 621 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 PCCAP05165 728 aaPredicted RBP17.04■□□□□ 0.32
ACTN1-211ENST00000553882 LDHAL6AQ6ZMR3 332 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 ZBTB38Q8NAP3 1195 aaPredicted RBP17.04■□□□□ 0.32
ACTN1-211ENST00000553882 GOLGA6L19H0YKK7 550 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 MCAMP43121 646 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 ATP2B3Q16720 1220 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 LRRFIP1Q32MZ4 808 aaKnown RBP17.04■□□□□ 0.32
ACTN1-211ENST00000553882 APPBP2Q92624 585 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 CLIP2Q9UDT6 1046 aa17.04■□□□□ 0.32
ACTN1-211ENST00000553882 ITGA6P23229 1130 aa17.03■□□□□ 0.32
ACTN1-211ENST00000553882 RALYLQ86SE5 291 aaKnown RBP17.03■□□□□ 0.32
ACTN1-211ENST00000553882 VSIG10Q8N0Z9 540 aa17.03■□□□□ 0.32
ACTN1-211ENST00000553882 SLAIN2Q9P270 581 aa17.03■□□□□ 0.32
ACTN1-211ENST00000553882 ZFYP08048 801 aaPredicted RBP17.03■□□□□ 0.32
ACTN1-211ENST00000553882 PCDHA7Q9UN72 937 aa17.03■□□□□ 0.32
ACTN1-211ENST00000553882 A0A1B0GVL5 298 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 ZNF213O14771 459 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 ANTXR2P58335 489 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 FAM160A1Q05DH4 1040 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 IQCB1Q15051 598 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 MB21D2Q8IYB1 491 aaPredicted RBP17.02■□□□□ 0.32
ACTN1-211ENST00000553882 C8orf76Q96K31 380 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 CNNM1Q9NRU3 951 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 HPS5Q9UPZ3 1129 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 NWD2Q9ULI1 1742 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 MYH15Q9Y2K3 1946 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 PAPPAQ13219 1627 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 CPLX1O14810 134 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 CSF1RP07333 972 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 STX1AQ16623 288 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 CCDC144BQ3MJ40 725 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 ZSCAN25Q6NSZ9 544 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 TICAM2Q86XR7 235 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 CCDC144CPQ8IYA2 1237 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 ENGASEQ8NFI3 743 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 ORC3Q9UBD5 711 aaPredicted RBP17.02■□□□□ 0.32
ACTN1-211ENST00000553882 CLIC4Q9Y696 253 aa17.02■□□□□ 0.32
ACTN1-211ENST00000553882 SOS2Q07890 1332 aaPredicted RBP17.02■□□□□ 0.31
ACTN1-211ENST00000553882 TRIM28Q13263 835 aaKnown RBP17.01■□□□□ 0.31
ACTN1-211ENST00000553882 SLC9C2Q5TAH2 1124 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 NCOA7Q8NI08 942 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 SPEF2Q9C093 1822 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 BECN2A8MW95 431 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 IDH1O75874 414 aaKnown RBP17.01■□□□□ 0.31
ACTN1-211ENST00000553882 STARD3NLO95772 234 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 APPP05067 770 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 RXRAP19793 462 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 SF3A1Q15459 793 aaKnown RBP17.01■□□□□ 0.31
ACTN1-211ENST00000553882 RIC1Q4ADV7 1423 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 TTLL11Q8NHH1 800 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 NKX2-3Q8TAU0 364 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 C16orf45Q96MC5 204 aaPredicted RBP17.01■□□□□ 0.31
ACTN1-211ENST00000553882 RIPOR2Q9Y4F9 1068 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 SHANK3Q9BYB0 1731 aa17.01■□□□□ 0.31
ACTN1-211ENST00000553882 CTAGE5O15320 804 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 EVCP57679 992 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 GIGYF2Q6Y7W6 1299 aaKnown RBP17■□□□□ 0.31
ACTN1-211ENST00000553882 SDF4Q9BRK5 362 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 MAP3K15Q6ZN16 1313 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 STK38Q15208 465 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 NLRP10Q86W26 655 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 CACTINQ8WUQ7 758 aaKnown RBP17■□□□□ 0.31
ACTN1-211ENST00000553882 MRPS27Q92552 414 aaKnown RBP17■□□□□ 0.31
ACTN1-211ENST00000553882 SYTL4Q96C24 671 aaPredicted RBP17■□□□□ 0.31
ACTN1-211ENST00000553882 FBXO3Q9UK99 471 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 TOGARAM1Q9Y4F4 1720 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 NDUFA8P51970 172 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 CHAF1AQ13111 956 aaPredicted RBP17■□□□□ 0.31
ACTN1-211ENST00000553882 ARID5BQ14865 1188 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 FBXO18Q8NFZ0 1043 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 MAP7D2Q96T17 732 aa17■□□□□ 0.31
ACTN1-211ENST00000553882 CAVIN2O95810 425 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 ATL3Q6DD88 541 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 FBXL16Q8N461 479 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 LINC00301Q8NCQ3 95 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 AIFM3Q96NN9 605 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 PLA2G12BQ9BX93 195 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.99■□□□□ 0.31
ACTN1-211ENST00000553882 RIOK3O14730 519 aaKnown RBP16.99■□□□□ 0.31
ACTN1-211ENST00000553882 DHX16O60231 1041 aaKnown RBP16.99■□□□□ 0.31
ACTN1-211ENST00000553882 CTSWP56202 376 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.99■□□□□ 0.31
ACTN1-211ENST00000553882 ZNF710Q8N1W2 664 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 HELBQ8NG08 1087 aaPredicted RBP16.99■□□□□ 0.31
ACTN1-211ENST00000553882 NBPF3Q9H094 633 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 RTEL1Q9NZ71 1219 aa16.99■□□□□ 0.31
ACTN1-211ENST00000553882 TRMT112Q9UI30 125 aaKnown RBP16.99■□□□□ 0.31
ACTN1-211ENST00000553882 XIRP1Q702N8 1843 aaKnown RBP16.98■□□□□ 0.31
ACTN1-211ENST00000553882 KIF28PB7ZC32 967 aa16.98■□□□□ 0.31
ACTN1-211ENST00000553882 IRS4O14654 1257 aaPredicted RBP16.98■□□□□ 0.31
ACTN1-211ENST00000553882 TBC1D10CQ8IV04 446 aa16.98■□□□□ 0.31
ACTN1-211ENST00000553882 DHX40Q8IX18 779 aaKnown RBP16.98■□□□□ 0.31
ACTN1-211ENST00000553882 FMR1NBQ8N0W7 255 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms