RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 GRPEL1Q9HAV7 217 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 CTNNA3Q9UI47 895 aa16.82■□□□□ 0.28
LDB3-207ENST00000542786 ZSCAN23Q3MJ62 389 aa16.81■□□□□ 0.28
LDB3-207ENST00000542786 SLC9C2Q5TAH2 1124 aa16.81■□□□□ 0.28
LDB3-207ENST00000542786 LRRC2Q9BYS8 371 aa16.81■□□□□ 0.28
LDB3-207ENST00000542786 NBPF3Q9H094 633 aa16.81■□□□□ 0.28
LDB3-207ENST00000542786 RBM27Q9P2N5 1060 aaKnown RBP16.81■□□□□ 0.28
LDB3-207ENST00000542786 CCNL1Q9UK58 526 aaPredicted RBP16.81■□□□□ 0.28
LDB3-207ENST00000542786 ZNF804BA4D1E1 1349 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 ZNF532Q9HCE3 1301 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 MBD3O95983 291 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 EVCP57679 992 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 USP48Q86UV5 1035 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 BRF1Q92994 677 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 CDC5LQ99459 802 aaKnown RBP16.8■□□□□ 0.28
LDB3-207ENST00000542786 TMEM63CQ9P1W3 806 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 TCHHQ07283 1943 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 GNPATO15228 680 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 GADD45BO75293 160 aaPredicted RBP16.8■□□□□ 0.28
LDB3-207ENST00000542786 PDIA4P13667 645 aaKnown RBP16.8■□□□□ 0.28
LDB3-207ENST00000542786 MB21D2Q8IYB1 491 aaPredicted RBP16.8■□□□□ 0.28
LDB3-207ENST00000542786 SMARCC2Q8TAQ2 1214 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 PANK2Q9BZ23 570 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 GDPD2Q9HCC8 539 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 CNPY2Q9Y2B0 182 aa16.8■□□□□ 0.28
LDB3-207ENST00000542786 TAF1P21675 1872 aa16.79■□□□□ 0.28
LDB3-207ENST00000542786 JAK2O60674 1132 aa16.79■□□□□ 0.28
LDB3-207ENST00000542786 IDH1O75874 414 aaKnown RBP16.79■□□□□ 0.28
LDB3-207ENST00000542786 SCRN1Q12765 414 aa16.79■□□□□ 0.28
LDB3-207ENST00000542786 STK3Q13188 491 aa16.79■□□□□ 0.28
LDB3-207ENST00000542786 BCAMP50895 628 aa16.78■□□□□ 0.28
LDB3-207ENST00000542786 FOXD4L6Q3SYB3 417 aaPredicted RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 FOXD4L3Q6VB84 417 aaPredicted RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 CDC37L1Q7L3B6 337 aa16.78■□□□□ 0.28
LDB3-207ENST00000542786 BSDC1Q9NW68 430 aaPredicted RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 COL1A1P02452 1464 aaPredicted RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 ZMYM6O95789 1325 aa16.78■□□□□ 0.28
LDB3-207ENST00000542786 CTDNEP1O95476 244 aa16.78■□□□□ 0.28
LDB3-207ENST00000542786 PDCP20941 246 aa16.78■□□□□ 0.28
LDB3-207ENST00000542786 ANTXR2P58335 489 aa16.78■□□□□ 0.28
LDB3-207ENST00000542786 IMMTQ16891 758 aaKnown RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 LARP1BQ659C4 914 aaKnown RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 STRBPQ96SI9 672 aaKnown RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 LLPHQ9BRT6 129 aaKnown RBP16.78■□□□□ 0.28
LDB3-207ENST00000542786 SALL1Q9NSC2 1324 aa16.77■□□□□ 0.28
LDB3-207ENST00000542786 TNRC6CQ9HCJ0 1690 aaKnown RBP16.77■□□□□ 0.28
LDB3-207ENST00000542786 HAND2P61296 217 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 APOBRQ0VD83 1088 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 ALX1Q15699 326 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 BICDL1Q6ZP65 573 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 ANKRD18AQ8IVF6 992 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 SEPT12Q8IYM1 358 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 ARHGEF1Q92888 912 aaKnown RBP16.77■□□□□ 0.27
LDB3-207ENST00000542786 ATP6V1DQ9Y5K8 247 aa16.77■□□□□ 0.27
LDB3-207ENST00000542786 WDR19Q8NEZ3 1342 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 WTIPA6NIX2 430 aaPredicted RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 NCLP19338 710 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 MEX3CQ5U5Q3 659 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 TIAM2Q8IVF5 1701 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 NSUN7Q8NE18 718 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 CELF1Q92879 486 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 ZNF274Q96GC6 653 aaPredicted RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 NYXQ9GZU5 481 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 MINPP1Q9UNW1 487 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 RTCBQ9Y3I0 505 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 VPS37CA5D8V6 355 aaPredicted RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 PDIA3P30101 505 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 DNM1Q05193 864 aaKnown RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 UBE4AQ14139 1066 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 TBC1D10CQ8IV04 446 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 NKX2-3Q8TAU0 364 aa16.76■□□□□ 0.27
LDB3-207ENST00000542786 EPB41L4AQ9HCS5 686 aaPredicted RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 GPHNQ9NQX3 736 aaPredicted RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 TRPC5Q9UL62 973 aaPredicted RBP16.76■□□□□ 0.27
LDB3-207ENST00000542786 SETDB2Q96T68 719 aa16.75■□□□□ 0.27
LDB3-207ENST00000542786 TM4SF1P30408 202 aa16.74■□□□□ 0.27
LDB3-207ENST00000542786 MAP3K12Q12852 859 aa16.74■□□□□ 0.27
LDB3-207ENST00000542786 CHST3Q7LGC8 479 aa16.74■□□□□ 0.27
LDB3-207ENST00000542786 MAGEB6Q8N7X4 407 aa16.74■□□□□ 0.27
LDB3-207ENST00000542786 BCL11BQ9C0K0 894 aaPredicted RBP16.74■□□□□ 0.27
LDB3-207ENST00000542786 LRRC4BQ9NT99 713 aa16.74■□□□□ 0.27
LDB3-207ENST00000542786 ZPR1O75312 459 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 PNPLA7Q6ZV29 1317 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 ZNF213O14771 459 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 PRC1O43663 620 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 RESTQ13127 1097 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 NBPF5PQ86XG9 351 aaPredicted RBP16.73■□□□□ 0.27
LDB3-207ENST00000542786 HPS5Q9UPZ3 1129 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 CACNA1SQ13698 1873 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 UBR3Q6ZT12 1888 aa16.73■□□□□ 0.27
LDB3-207ENST00000542786 MBD4O95243 580 aa16.72■□□□□ 0.27
LDB3-207ENST00000542786 MCM5P33992 734 aa16.72■□□□□ 0.27
LDB3-207ENST00000542786 UBE2HP62256 183 aa16.72■□□□□ 0.27
LDB3-207ENST00000542786 NCOA7Q8NI08 942 aa16.72■□□□□ 0.27
LDB3-207ENST00000542786 DENND2AQ9ULE3 1009 aa16.72■□□□□ 0.27
LDB3-207ENST00000542786 IRS2Q9Y4H2 1338 aa16.72■□□□□ 0.27
LDB3-207ENST00000542786 PTPDC1A2A3K4 754 aa16.71■□□□□ 0.27
LDB3-207ENST00000542786 GSG1L2A8MUP6 293 aa16.71■□□□□ 0.27
LDB3-207ENST00000542786 FIBPO43427 364 aa16.71■□□□□ 0.27
LDB3-207ENST00000542786 GYG1P46976 350 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms