RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 BHLHE41Q9C0J9 482 aaPredicted RBP7.16□□□□□ -1.26
VPS13A-213ENST00000539950 METTL12A8MUP2 240 aa7.15□□□□□ -1.26
VPS13A-213ENST00000539950 C19orf57Q0VDD7 668 aa7.15□□□□□ -1.26
VPS13A-213ENST00000539950 GLYCTKQ8IVS8 523 aa7.15□□□□□ -1.26
VPS13A-213ENST00000539950 RETREG2Q8NC44 543 aa7.15□□□□□ -1.26
VPS13A-213ENST00000539950 UTP4Q969X6 686 aaKnown RBP7.15□□□□□ -1.26
VPS13A-213ENST00000539950 STOML1Q9UBI4 398 aa7.15□□□□□ -1.26
VPS13A-213ENST00000539950 DHX15O43143 795 aaKnown RBP7.14□□□□□ -1.27
VPS13A-213ENST00000539950 PREPP48147 710 aa7.14□□□□□ -1.27
VPS13A-213ENST00000539950 ARL4DP49703 201 aa7.14□□□□□ -1.27
VPS13A-213ENST00000539950 UVSSAQ2YD98 709 aa7.14□□□□□ -1.27
VPS13A-213ENST00000539950 RUSC1Q9BVN2 902 aa7.14□□□□□ -1.27
VPS13A-213ENST00000539950 RNF208Q9H0X6 261 aa7.14□□□□□ -1.27
VPS13A-213ENST00000539950 BRPF3Q9ULD4 1205 aa7.14□□□□□ -1.27
VPS13A-213ENST00000539950 USPL1Q5W0Q7 1092 aa7.13□□□□□ -1.27
VPS13A-213ENST00000539950 SLC51AQ86UW1 340 aa7.13□□□□□ -1.27
VPS13A-213ENST00000539950 TXNDC2Q86VQ3 553 aa7.13□□□□□ -1.27
VPS13A-213ENST00000539950 MYRFLQ96LU7 910 aa7.13□□□□□ -1.27
VPS13A-213ENST00000539950 A0A1W2PP55 124 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-213ENST00000539950 IGLV1-40P01703 118 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 ESRRAP11474 423 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-213ENST00000539950 ANKRD34AQ69YU3 496 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-213ENST00000539950 NBPF11Q86T75 865 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 TRIM42Q8IWZ5 723 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 GALNT12Q8IXK2 581 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 USP26Q9BXU7 913 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 C7orf69Q9H7B7 122 aa7.12□□□□□ -1.27
VPS13A-213ENST00000539950 HMX2A2RU54 273 aa7.11□□□□□ -1.27
VPS13A-213ENST00000539950 SART1O43290 800 aaKnown RBP7.11□□□□□ -1.27
VPS13A-213ENST00000539950 DLGAP3O95886 979 aa7.11□□□□□ -1.27
VPS13A-213ENST00000539950 ORC1Q13415 861 aa7.11□□□□□ -1.27
VPS13A-213ENST00000539950 FAM20CQ8IXL6 584 aa7.11□□□□□ -1.27
VPS13A-213ENST00000539950 TCF12Q99081 682 aa7.11□□□□□ -1.27
VPS13A-213ENST00000539950 LOC100289279A0A1B0GTE1 492 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 MEGF11A6BM72 1044 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 BMP3P12645 472 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 SSTR4P31391 388 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 GRIA4P48058 902 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 NFIAQ12857 509 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 SPRED3Q2MJR0 410 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 FDX2Q6P4F2 183 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 CCNJLQ8IV13 435 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 FAM129BQ96TA1 746 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 TMPRSS13Q9BYE2 586 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 SOX17Q9H6I2 414 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-213ENST00000539950 LIN7BQ9HAP6 207 aa7.1□□□□□ -1.27
VPS13A-213ENST00000539950 A0A096LPE4 126 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 A0A1W2PPZ6 126 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 GSC2O15499 205 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 NDUFB5O43674 189 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 TGFB1P01137 390 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 GSTM4Q03013 218 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 FAM83CQ9BQN1 747 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 KRTAP9-2Q9BYQ4 174 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 KCNF1Q9H3M0 494 aa7.09□□□□□ -1.27
VPS13A-213ENST00000539950 GPR182O15218 404 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 IGHA2P01877 340 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 CD97P48960 835 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 PCDH1Q08174 1060 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 ZNF423Q2M1K9 1284 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 NUTM2GQ5VZR2 741 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 RNF43Q68DV7 783 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 BEND4Q6ZU67 534 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 ZDHHC13Q8IUH4 622 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 CLEC10AQ8IUN9 316 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 NRSN2Q9GZP1 204 aa7.08□□□□□ -1.28
VPS13A-213ENST00000539950 MED26O95402 600 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 TIAF1O95411 115 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 PDE3BQ13370 1112 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 SGO2Q562F6 1265 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 C12orf50Q8NA57 414 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-213ENST00000539950 SMG8Q8ND04 991 aaKnown RBP7.07□□□□□ -1.28
VPS13A-213ENST00000539950 DBNDD2Q9BQY9 259 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 CLEC4MQ9H2X3 399 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-213ENST00000539950 SUGCTQ9HAC7 445 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 NPHS2Q9NP85 383 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 PCMTD2Q9NV79 361 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 TIMELESSQ9UNS1 1208 aa7.07□□□□□ -1.28
VPS13A-213ENST00000539950 GAS2O43903 313 aaKnown RBP7.06□□□□□ -1.28
VPS13A-213ENST00000539950 CPNE3O75131 537 aaKnown RBP7.06□□□□□ -1.28
VPS13A-213ENST00000539950 NEFLP07196 543 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 DRD2P14416 443 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 KIAA0319Q5VV43 1072 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 ERICH6Q7L0X2 663 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 CITED4Q96RK1 184 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 NIF3L1Q9GZT8 377 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 CYP4F12Q9HCS2 524 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 HIF3AQ9Y2N7 669 aa7.06□□□□□ -1.28
VPS13A-213ENST00000539950 PRR19A6NJB7 356 aa7.05□□□□□ -1.28
VPS13A-213ENST00000539950 CTSBP07858 339 aa7.05□□□□□ -1.28
VPS13A-213ENST00000539950 MAP4P27816 1152 aaKnown RBP7.05□□□□□ -1.28
VPS13A-213ENST00000539950 EXOSC6Q5RKV6 272 aaKnown RBP7.05□□□□□ -1.28
VPS13A-213ENST00000539950 TMC1Q8TDI8 760 aa7.05□□□□□ -1.28
VPS13A-213ENST00000539950 EHD4Q9H223 541 aa7.05□□□□□ -1.28
VPS13A-213ENST00000539950 KRTAP9-6A0A140TA67 174 aa7.04□□□□□ -1.28
VPS13A-213ENST00000539950 EIF1AYO14602 144 aaKnown RBP7.04□□□□□ -1.28
VPS13A-213ENST00000539950 COBLO75128 1261 aa7.04□□□□□ -1.28
VPS13A-213ENST00000539950 MAOBP27338 520 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms