RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 BRF1Q92994 677 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 AGXT2Q9BYV1 514 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 XRCC6P12956 609 aaKnown RBP eCLIP24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 HSPA1LP34931 641 aa24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 FOXD4L6Q3SYB3 417 aaPredicted RBP24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 LARP1BQ659C4 914 aaKnown RBP24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 FOXD4L3Q6VB84 417 aaPredicted RBP24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 SMIM5Q71RC9 77 aa24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 ANKRD18AQ8IVF6 992 aa24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 TMEM87AQ8NBN3 555 aa24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 LRRC2Q9BYS8 371 aa24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 GRPEL1Q9HAV7 217 aa24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 RTCBQ9Y3I0 505 aaKnown RBP24.43■■□□□ 1.5
SMPDL3A-203ENST00000539041 SNAP23O00161 211 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 ZPR1O75312 459 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 FGAP02671 866 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 PDE6AP16499 860 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 SRP68Q9UHB9 627 aaKnown RBP24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 ZNF532Q9HCE3 1301 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 BRWD3Q6RI45 1802 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 UBR3Q6ZT12 1888 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 VPS37CA5D8V6 355 aaPredicted RBP24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 ONECUT3O60422 494 aaPredicted RBP24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 DTNBO60941 627 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 GTF2E1P29083 439 aaPredicted RBP24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 RASGRF1Q13972 1273 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 C3orf67Q6ZVT6 689 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 GAS2L3Q86XJ1 694 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 TRPC5Q9UL62 973 aaPredicted RBP24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 BRPF3Q9ULD4 1205 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 WWC3Q9ULE0 1092 aa24.42■■□□□ 1.5
SMPDL3A-203ENST00000539041 ZNF445P59923 1031 aa24.41■■□□□ 1.5
SMPDL3A-203ENST00000539041 SETDB2Q96T68 719 aa24.41■■□□□ 1.5
SMPDL3A-203ENST00000539041 TCRBV5S4A2TA0A5A2 114 aa24.4■■□□□ 1.5
SMPDL3A-203ENST00000539041 PFKFB2O60825 505 aa24.4■■□□□ 1.5
SMPDL3A-203ENST00000539041 ZSCAN23Q3MJ62 389 aa24.4■■□□□ 1.5
SMPDL3A-203ENST00000539041 USP48Q86UV5 1035 aa24.39■■□□□ 1.5
SMPDL3A-203ENST00000539041 CNPY2Q9Y2B0 182 aa24.39■■□□□ 1.5
SMPDL3A-203ENST00000539041 HAND2P61296 217 aa24.39■■□□□ 1.49
SMPDL3A-203ENST00000539041 MAP3K12Q12852 859 aa24.39■■□□□ 1.49
SMPDL3A-203ENST00000539041 GDPD2Q9HCC8 539 aa24.39■■□□□ 1.49
SMPDL3A-203ENST00000539041 BSDC1Q9NW68 430 aaPredicted RBP24.39■■□□□ 1.49
SMPDL3A-203ENST00000539041 NSFL1CQ9UNZ2 370 aaKnown RBP24.39■■□□□ 1.49
SMPDL3A-203ENST00000539041 TNRC6CQ9HCJ0 1690 aaKnown RBP24.38■■□□□ 1.49
SMPDL3A-203ENST00000539041 BCAMP50895 628 aa24.38■■□□□ 1.49
SMPDL3A-203ENST00000539041 APOBRQ0VD83 1088 aa24.38■■□□□ 1.49
SMPDL3A-203ENST00000539041 SEPT12Q8IYM1 358 aa24.38■■□□□ 1.49
SMPDL3A-203ENST00000539041 FBXL16Q8N461 479 aa24.38■■□□□ 1.49
SMPDL3A-203ENST00000539041 RBM27Q9P2N5 1060 aaKnown RBP24.38■■□□□ 1.49
SMPDL3A-203ENST00000539041 ZNF213O14771 459 aa24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 SCRN1Q12765 414 aa24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 NBPF5PQ86XG9 351 aaPredicted RBP24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 LLPHQ9BRT6 129 aaKnown RBP24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 UBE4AQ14139 1066 aa24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 ARHGEF1Q92888 912 aaKnown RBP24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 TMEM63CQ9P1W3 806 aa24.37■■□□□ 1.49
SMPDL3A-203ENST00000539041 TIAM2Q8IVF5 1701 aa24.36■■□□□ 1.49
SMPDL3A-203ENST00000539041 CSPP1Q1MSJ5 1256 aa24.36■■□□□ 1.49
SMPDL3A-203ENST00000539041 MAGEB6Q8N7X4 407 aa24.36■■□□□ 1.49
SMPDL3A-203ENST00000539041 NCOA7Q8NI08 942 aa24.36■■□□□ 1.49
SMPDL3A-203ENST00000539041 AIDAQ96BJ3 306 aa24.36■■□□□ 1.49
SMPDL3A-203ENST00000539041 NLRP3Q96P20 1036 aa24.36■■□□□ 1.49
SMPDL3A-203ENST00000539041 CDC37L1Q7L3B6 337 aa24.35■■□□□ 1.49
SMPDL3A-203ENST00000539041 MB21D2Q8IYB1 491 aaPredicted RBP24.35■■□□□ 1.49
SMPDL3A-203ENST00000539041 SMARCC2Q8TAQ2 1214 aa24.35■■□□□ 1.49
SMPDL3A-203ENST00000539041 ZNF274Q96GC6 653 aaPredicted RBP24.35■■□□□ 1.49
SMPDL3A-203ENST00000539041 CCDC88AQ3V6T2 1871 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 ZNF804BA4D1E1 1349 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 JAK2O60674 1132 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 GADD45BO75293 160 aaPredicted RBP24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 TPTE2Q6XPS3 522 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 CHMP4CQ96CF2 233 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 STRBPQ96SI9 672 aaKnown RBP24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 ZMYM6O95789 1325 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 WDR19Q8NEZ3 1342 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 MCM5P33992 734 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 CHST3Q7LGC8 479 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 RALYLQ86SE5 291 aaKnown RBP24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 AMIGO3Q86WK7 504 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 CELF1Q92879 486 aaKnown RBP24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 BCL11BQ9C0K0 894 aaPredicted RBP24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 MINPP1Q9UNW1 487 aa24.34■■□□□ 1.49
SMPDL3A-203ENST00000539041 DNM1Q05193 864 aaKnown RBP24.33■■□□□ 1.49
SMPDL3A-203ENST00000539041 ALX1Q15699 326 aa24.33■■□□□ 1.49
SMPDL3A-203ENST00000539041 SYAP1Q96A49 352 aaPredicted RBP24.33■■□□□ 1.49
SMPDL3A-203ENST00000539041 GNL3LQ9NVN8 582 aaKnown RBP24.33■■□□□ 1.49
SMPDL3A-203ENST00000539041 CACNA1SQ13698 1873 aa24.32■■□□□ 1.48
SMPDL3A-203ENST00000539041 APPP05067 770 aa24.32■■□□□ 1.48
SMPDL3A-203ENST00000539041 EVCP57679 992 aa24.32■■□□□ 1.48
SMPDL3A-203ENST00000539041 TRAPPC3LQ5T215 181 aa24.32■■□□□ 1.48
SMPDL3A-203ENST00000539041 NSUN7Q8NE18 718 aaKnown RBP24.32■■□□□ 1.48
SMPDL3A-203ENST00000539041 PANK2Q9BZ23 570 aa24.32■■□□□ 1.48
SMPDL3A-203ENST00000539041 FIBPO43427 364 aa24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 PRC1O43663 620 aa24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 RFC4P35249 363 aa24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 MBD4O95243 580 aa24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 PDIA3P30101 505 aaKnown RBP24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 HMGN5P82970 282 aaKnown RBP24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 FAM184AQ8NB25 1140 aa24.31■■□□□ 1.48
SMPDL3A-203ENST00000539041 MAST2Q6P0Q8 1798 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms