RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 ZBTB43O43298 467 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 IARSP41252 1262 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 GSTO1P78417 241 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 USPL1Q5W0Q7 1092 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 CHST3Q7LGC8 479 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 ESR2Q92731 530 aa12.99□□□□□ -0.33
TRIM3-211ENST00000532542 NAT10Q9H0A0 1025 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 TFIP11Q9UBB9 837 aaKnown RBP12.99□□□□□ -0.33
TRIM3-211ENST00000532542 GUCY1B3Q02153 619 aa12.98□□□□□ -0.33
TRIM3-211ENST00000532542 UBE3CQ15386 1083 aa12.98□□□□□ -0.33
TRIM3-211ENST00000532542 MAP3K11Q16584 847 aa12.98□□□□□ -0.33
TRIM3-211ENST00000532542 PHKA1P46020 1223 aa12.98□□□□□ -0.33
TRIM3-211ENST00000532542 DNM1Q05193 864 aaKnown RBP12.98□□□□□ -0.33
TRIM3-211ENST00000532542 ZNF804AQ7Z570 1209 aa12.98□□□□□ -0.33
TRIM3-211ENST00000532542 WTAPQ15007 396 aa12.98□□□□□ -0.33
TRIM3-211ENST00000532542 PTPDC1A2A3K4 754 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 PDE6AP16499 860 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 HIBADHP31937 336 aaKnown RBP12.97□□□□□ -0.33
TRIM3-211ENST00000532542 CHRNDQ07001 517 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 SSRP1Q08945 709 aaKnown RBP12.97□□□□□ -0.33
TRIM3-211ENST00000532542 MIGA1Q8NAN2 632 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 MAST3O60307 1309 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 CSF1RP07333 972 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 PDE4BQ07343 736 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 SYNE4Q8N205 404 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 RBM27Q9P2N5 1060 aaKnown RBP12.97□□□□□ -0.33
TRIM3-211ENST00000532542 COL15A1P39059 1388 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 LMO7Q8WWI1 1683 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 SPATA31A6Q5VVP1 1343 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 CATIPQ7Z7H3 387 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 MKNK2Q9HBH9 465 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 DDX19AQ9NUU7 478 aaKnown RBP12.97□□□□□ -0.33
TRIM3-211ENST00000532542 TPCN1Q9ULQ1 816 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 POLR3DP05423 398 aaPredicted RBP12.97□□□□□ -0.33
TRIM3-211ENST00000532542 CYP21A2P08686 494 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 UBE4AQ14139 1066 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 SEC31BQ9NQW1 1179 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 TFCP2L1Q9NZI6 479 aa12.97□□□□□ -0.33
TRIM3-211ENST00000532542 RPS6KA4O75676 772 aa12.96□□□□□ -0.33
TRIM3-211ENST00000532542 PKP1Q13835 747 aa12.96□□□□□ -0.33
TRIM3-211ENST00000532542 CTCFLQ8NI51 663 aaPredicted RBP12.96□□□□□ -0.33
TRIM3-211ENST00000532542 TMEM87BQ96K49 555 aa12.96□□□□□ -0.33
TRIM3-211ENST00000532542 CCDC39Q9UFE4 941 aa12.96□□□□□ -0.33
TRIM3-211ENST00000532542 KCNQ2O43526 872 aa12.96□□□□□ -0.33
TRIM3-211ENST00000532542 ATP2B1P20020 1258 aa12.96□□□□□ -0.33
TRIM3-211ENST00000532542 ZNF34Q8IZ26 560 aa12.96□□□□□ -0.34
TRIM3-211ENST00000532542 GTF3C6Q969F1 213 aa12.96□□□□□ -0.34
TRIM3-211ENST00000532542 BCL11BQ9C0K0 894 aaPredicted RBP12.96□□□□□ -0.34
TRIM3-211ENST00000532542 LMBRD1Q9NUN5 540 aa12.96□□□□□ -0.34
TRIM3-211ENST00000532542 BCL9O00512 1426 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 LRSAM1Q6UWE0 723 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 QTRT2Q9H974 415 aaKnown RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 ARMT1Q9H993 441 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 NSFL1CQ9UNZ2 370 aaKnown RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 ABCC12Q96J65 1359 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 FGAP02671 866 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 RAB11FIP4Q86YS3 637 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 ANGEL1Q9UNK9 670 aaKnown RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 MTMR7Q9Y216 660 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 BCAMP50895 628 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 RBM17Q96I25 401 aaKnown RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 NOL7Q9UMY1 257 aaKnown RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 PATL2C9JE40 543 aaKnown RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 CASP7P55210 303 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 KCNQ4P56696 695 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 ERFEQ4G0M1 354 aa12.95□□□□□ -0.34
TRIM3-211ENST00000532542 ZNF444Q8N0Y2 327 aaPredicted RBP12.95□□□□□ -0.34
TRIM3-211ENST00000532542 TNS2Q63HR2 1409 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.94□□□□□ -0.34
TRIM3-211ENST00000532542 RIPOR2Q9Y4F9 1068 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 FAM196AQ6ZSG2 479 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 CCDC144CPQ8IYA2 1237 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 OSBP2Q969R2 916 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 ZNF274Q96GC6 653 aaPredicted RBP12.94□□□□□ -0.34
TRIM3-211ENST00000532542 NARFQ9UHQ1 456 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 MARCH6O60337 910 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 PPFIA3O75145 1194 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 XRCC6P12956 609 aaKnown RBP eCLIP12.94□□□□□ -0.34
TRIM3-211ENST00000532542 ADD2P35612 726 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 FAM182BQ5T319 152 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 TTLL5Q6EMB2 1281 aa12.94□□□□□ -0.34
TRIM3-211ENST00000532542 CTAGE5O15320 804 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 RAD21O60216 631 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 SEPT12Q8IYM1 358 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 ALG1Q9BT22 464 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 TSPY2A6NKD2 308 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 B4E1Z4 1266 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 LDHBP07195 334 aaKnown RBP12.93□□□□□ -0.34
TRIM3-211ENST00000532542 RTN1Q16799 776 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 ATL3Q6DD88 541 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 CCDC82Q8N4S0 544 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 SLC26A6Q9BXS9 759 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 CEP131Q9UPN4 1083 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 PI16Q6UXB8 463 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 CCDC24Q8N4L8 307 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 TTC14Q96N46 770 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 M0R2C6 588 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 WDR66Q8TBY9 1149 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 FAM13BQ9NYF5 915 aa12.93□□□□□ -0.34
TRIM3-211ENST00000532542 AFF2P51816 1311 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms