RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 NOD1Q9Y239 953 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.95□□□□□ -0.34
PTPRK-221ENST00000532331 GJB2P29033 226 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 MAP3K9P80192 1104 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 CNNM3Q8NE01 707 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 ERBB4Q15303 1308 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 USP6P35125 1406 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 SDSP20132 328 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 SFPQP23246 707 aaKnown RBP eCLIP12.95□□□□□ -0.344e-7■□□□□ 11
PTPRK-221ENST00000532331 SMCR8Q8TEV9 937 aaPredicted RBP12.95□□□□□ -0.34
PTPRK-221ENST00000532331 ZNF526Q8TF50 670 aaPredicted RBP12.95□□□□□ -0.34
PTPRK-221ENST00000532331 TEKT1Q969V4 418 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 PRC1O43663 620 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 GIGYF1O75420 1035 aaPredicted RBP12.95□□□□□ -0.34
PTPRK-221ENST00000532331 PARP1P09874 1014 aaKnown RBP12.95□□□□□ -0.34
PTPRK-221ENST00000532331 IRX3P78415 501 aaPredicted RBP12.95□□□□□ -0.34
PTPRK-221ENST00000532331 SPA17Q15506 151 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 TNNI3KQ59H18 835 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 TBC1D2Q9BYX2 928 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 FPGT-TNNI3KV9GXZ4 949 aa12.95□□□□□ -0.34
PTPRK-221ENST00000532331 ZYXQ15942 572 aaKnown RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 GPHNQ9NQX3 736 aaPredicted RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 TTF2Q9UNY4 1162 aaKnown RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 PER1O15534 1290 aaPredicted RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 SBNO2Q9Y2G9 1366 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 PPEF1O14829 653 aaPredicted RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 EIF3JO75822 258 aaKnown RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 SSFA2P28290 1259 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 IL6STP40189 918 aaPredicted RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 DDX19AQ9NUU7 478 aaKnown RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 MAP3K15Q6ZN16 1313 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 CETN2P41208 172 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 LEKR1Q6ZMV7 388 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 LRRC2Q9BYS8 371 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 AATFQ9NY61 560 aaKnown RBP eCLIP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 STX6O43752 255 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 IGHDP01880 384 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 DALRD3Q5D0E6 543 aaKnown RBP12.94□□□□□ -0.34
PTPRK-221ENST00000532331 MFSD14BQ5SR56 506 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 CACNA2D4Q7Z3S7 1137 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 FSIP1Q8NA03 581 aa12.94□□□□□ -0.34
PTPRK-221ENST00000532331 ERBB3P21860 1342 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 PPFIA3O75145 1194 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 DOK7Q18PE1 504 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 ZRSR2Q15696 482 aaKnown RBP12.93□□□□□ -0.34
PTPRK-221ENST00000532331 DCAF15Q66K64 600 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 IL17REQ8NFR9 667 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 SUCLG2Q96I99 432 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 ALG1Q9BT22 464 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 SHROOM2Q13796 1616 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 ATP7BP35670 1465 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 VPS36Q86VN1 386 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 AS3MTQ9HBK9 375 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 ZSCAN12O43309 604 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 ZBED4O75132 1171 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 HSPA1LP34931 641 aa12.93□□□□□ -0.34
PTPRK-221ENST00000532331 RBM25P49756 843 aaKnown RBP12.93□□□□□ -0.34
PTPRK-221ENST00000532331 ARAP3Q8WWN8 1544 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 KIF2AO00139 706 aaPredicted RBP12.92□□□□□ -0.34
PTPRK-221ENST00000532331 TTLL7Q6ZT98 887 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 ARMT1Q9H993 441 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 HELLSQ9NRZ9 838 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 USP40Q9NVE5 1235 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 KCNQ3O43525 872 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 CALML3P27482 149 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 KCNQ4P56696 695 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 ZBTB38Q8NAP3 1195 aaPredicted RBP12.92□□□□□ -0.34
PTPRK-221ENST00000532331 KLHDC4Q8TBB5 520 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 MYOM2P54296 1465 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 CCDC171Q6TFL3 1326 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 BMP15O95972 392 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 TOP1P11387 765 aaKnown RBP12.92□□□□□ -0.34
PTPRK-221ENST00000532331 SPATA5Q8NB90 893 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 GJD4Q96KN9 370 aaPredicted RBP12.92□□□□□ -0.34
PTPRK-221ENST00000532331 KDM5AP29375 1690 aaKnown RBP12.92□□□□□ -0.34
PTPRK-221ENST00000532331 TNPO1Q92973 898 aaKnown RBP12.92□□□□□ -0.34
PTPRK-221ENST00000532331 KIF1BO60333 1816 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 BACH1O14867 736 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 GNA11P29992 359 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 CCDC174Q6PII3 467 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 TMC4Q7Z404 712 aa12.92□□□□□ -0.34
PTPRK-221ENST00000532331 NEURL1BA8MQ27 555 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 OTUD7BQ6GQQ9 843 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 TSPYL1Q9H0U9 437 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 GOPCQ9HD26 462 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 GPCPD1Q9NPB8 672 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 PRDM15P57071 1507 aaPredicted RBP12.91□□□□□ -0.34
PTPRK-221ENST00000532331 ARHGAP31Q2M1Z3 1444 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 Q6ZUG5 572 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 ESYT1Q9BSJ8 1104 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 ESPNB1AK53 854 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 DBNDD2Q9BQY9 259 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 DCTPP1Q9H773 170 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 ZBTB1Q9Y2K1 713 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 SP4Q02446 784 aa12.91□□□□□ -0.34
PTPRK-221ENST00000532331 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.91□□□□□ -0.34
PTPRK-221ENST00000532331 ARHGEF6Q15052 776 aa12.9□□□□□ -0.34
PTPRK-221ENST00000532331 TCERG1LQ5VWI1 586 aa12.9□□□□□ -0.34
PTPRK-221ENST00000532331 FERMT2Q96AC1 680 aa12.9□□□□□ -0.34
PTPRK-221ENST00000532331 SLC5A4Q9NY91 659 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms