RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ZNF213O14771 459 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 PRC1O43663 620 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 FOSBP53539 338 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 MB21D2Q8IYB1 491 aaPredicted RBP24.86■■□□□ 1.57
VPS28-205ENST00000526204 SPC24Q8NBT2 197 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 RIC1Q4ADV7 1423 aa24.86■■□□□ 1.57
VPS28-205ENST00000526204 FDPSP14324 419 aaKnown RBP24.85■■□□□ 1.57
VPS28-205ENST00000526204 CTSWP56202 376 aa24.85■■□□□ 1.57
VPS28-205ENST00000526204 RALYLQ86SE5 291 aaKnown RBP24.85■■□□□ 1.57
VPS28-205ENST00000526204 GPAA1O43292 621 aa24.85■■□□□ 1.57
VPS28-205ENST00000526204 HAND2P61296 217 aa24.85■■□□□ 1.57
VPS28-205ENST00000526204 DNAJC25Q9H1X3 360 aa24.85■■□□□ 1.57
VPS28-205ENST00000526204 KCNF1Q9H3M0 494 aa24.85■■□□□ 1.57
VPS28-205ENST00000526204 FAM160A1Q05DH4 1040 aa24.84■■□□□ 1.57
VPS28-205ENST00000526204 HLFQ16534 295 aa24.84■■□□□ 1.57
VPS28-205ENST00000526204 CNNM1Q9NRU3 951 aa24.84■■□□□ 1.57
VPS28-205ENST00000526204 PLA2G4DQ86XP0 818 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 RGS22Q8NE09 1264 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 MAP7D2Q96T17 732 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 TRIM5Q9C035 493 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 GREM2Q9H772 168 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 RTEL1Q9NZ71 1219 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 KINO60870 393 aaKnown RBP24.83■■□□□ 1.57
VPS28-205ENST00000526204 MCAMP43121 646 aa24.83■■□□□ 1.57
VPS28-205ENST00000526204 FTOQ9C0B1 505 aaKnown RBP eCLIP24.83■■□□□ 1.571e-6■■□□□ 11.8
VPS28-205ENST00000526204 KLF18A0A0U1RQI7 1052 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 CYP19A1P11511 503 aaPredicted RBP24.82■■□□□ 1.56
VPS28-205ENST00000526204 GPTP24298 496 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 ADD2P35612 726 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 ME1P48163 572 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 ZNF75DP51815 510 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 SNW1Q13573 536 aaKnown RBP24.82■■□□□ 1.56
VPS28-205ENST00000526204 STX1AQ16623 288 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 ILDR1Q86SU0 546 aaPredicted RBP24.82■■□□□ 1.56
VPS28-205ENST00000526204 MYRIPQ8NFW9 859 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 GOLGA8BA8MQT2 603 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 IRS4O14654 1257 aaPredicted RBP24.82■■□□□ 1.56
VPS28-205ENST00000526204 GUCY1B3Q02153 619 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 PI16Q6UXB8 463 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 SYNE4Q8N205 404 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 ENGASEQ8NFI3 743 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 C8orf76Q96K31 380 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 GOLPH3LQ9H4A5 285 aa24.82■■□□□ 1.56
VPS28-205ENST00000526204 TRDNQ13061 729 aa24.81■■□□□ 1.56
VPS28-205ENST00000526204 VGLL2Q8N8G2 317 aa24.81■■□□□ 1.56
VPS28-205ENST00000526204 GPHNQ9NQX3 736 aaPredicted RBP24.81■■□□□ 1.56
VPS28-205ENST00000526204 ERVV-1B6SEH8 477 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 BRAPQ7Z569 592 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 BTG4Q9NY30 223 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 TRMT112Q9UI30 125 aaKnown RBP24.8■■□□□ 1.56
VPS28-205ENST00000526204 HPS5Q9UPZ3 1129 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 BCL9O00512 1426 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 ATRNO75882 1429 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 NWD2Q9ULI1 1742 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 GOLGA6L19H0YKK7 550 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 CPLX1O14810 134 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 PDE8AO60658 829 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 PDE8BO95263 885 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 UBE3CQ15386 1083 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 SLC9C2Q5TAH2 1124 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 C17orf53Q8N3J3 647 aaPredicted RBP24.8■■□□□ 1.56
VPS28-205ENST00000526204 FBXO18Q8NFZ0 1043 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 PYCARDQ9ULZ3 195 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 MYH15Q9Y2K3 1946 aa24.8■■□□□ 1.56
VPS28-205ENST00000526204 A0A1W2PQ27 194 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 A0A1W2PQ64 194 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 A0A1W2PQD8 194 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 CDC25BP30305 580 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 ANTXR2P58335 489 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 ADALQ6DHV7 355 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 MTERF4Q7Z6M4 381 aaKnown RBP24.79■■□□□ 1.56
VPS28-205ENST00000526204 DRC7Q8IY82 874 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 ORC3Q9UBD5 711 aaPredicted RBP24.79■■□□□ 1.56
VPS28-205ENST00000526204 UQCRFS1P1P0C7P4 283 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 FSIP1Q8NA03 581 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 KCNG4Q8TDN1 519 aa24.79■■□□□ 1.56
VPS28-205ENST00000526204 PPFIA3O75145 1194 aa24.78■■□□□ 1.56
VPS28-205ENST00000526204 PTGS1P23219 599 aa24.78■■□□□ 1.56
VPS28-205ENST00000526204 IQCB1Q15051 598 aa24.78■■□□□ 1.56
VPS28-205ENST00000526204 GLIPR1L2Q4G1C9 344 aa24.78■■□□□ 1.56
VPS28-205ENST00000526204 SARM1Q6SZW1 724 aa24.78■■□□□ 1.56
VPS28-205ENST00000526204 MRPS27Q92552 414 aaKnown RBP24.78■■□□□ 1.56
VPS28-205ENST00000526204 ANO10Q9NW15 660 aa24.78■■□□□ 1.56
VPS28-205ENST00000526204 YEATS4O95619 227 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 POLR3EQ9NVU0 708 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 FAM13BQ9NYF5 915 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 PCDHA7Q9UN72 937 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 TBC1D2BQ9UPU7 963 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 ARID4AP29374 1257 aaPredicted RBP24.77■■□□□ 1.56
VPS28-205ENST00000526204 CCDC186Q7Z3E2 898 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 LINC00301Q8NCQ3 95 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 AK7Q96M32 723 aa24.77■■□□□ 1.56
VPS28-205ENST00000526204 DISP2A7MBM2 1401 aa24.76■■□□□ 1.55
VPS28-205ENST00000526204 LRP6O75581 1613 aa24.76■■□□□ 1.55
VPS28-205ENST00000526204 SLC4A9Q96Q91 983 aa24.76■■□□□ 1.55
VPS28-205ENST00000526204 GTF2F1P35269 517 aaKnown RBP eCLIP24.76■■□□□ 1.55
VPS28-205ENST00000526204 IL6STP40189 918 aaPredicted RBP24.76■■□□□ 1.55
VPS28-205ENST00000526204 RBM10P98175 930 aaKnown RBP24.76■■□□□ 1.55
VPS28-205ENST00000526204 FMR1NBQ8N0W7 255 aaPredicted RBP24.76■■□□□ 1.55
VPS28-205ENST00000526204 ANGEL1Q9UNK9 670 aaKnown RBP24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms