RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 CSF1RP07333 972 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 ZAP70P43403 619 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 CHAF1AQ13111 956 aaPredicted RBP12.96□□□□□ -0.34
HDAC9-228ENST00000524023 DDX60Q8IY21 1712 aaKnown RBP12.96□□□□□ -0.34
HDAC9-228ENST00000524023 MB21D2Q8IYB1 491 aaPredicted RBP12.96□□□□□ -0.34
HDAC9-228ENST00000524023 ZNF710Q8N1W2 664 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 FSIP1Q8NA03 581 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 FAM89AQ96GI7 184 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 CCDC85AQ96PX6 553 aaPredicted RBP12.96□□□□□ -0.34
HDAC9-228ENST00000524023 RTEL1Q9NZ71 1219 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 TOGARAM1Q9Y4F4 1720 aa12.96□□□□□ -0.34
HDAC9-228ENST00000524023 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
HDAC9-228ENST00000524023 ABCC12Q96J65 1359 aa12.95□□□□□ -0.34
HDAC9-228ENST00000524023 PRC1O43663 620 aa12.95□□□□□ -0.34
HDAC9-228ENST00000524023 TAF7LQ5H9L4 462 aa12.95□□□□□ -0.34
HDAC9-228ENST00000524023 APPBP2Q92624 585 aa12.95□□□□□ -0.34
HDAC9-228ENST00000524023 PUS7LQ9H0K6 701 aaKnown RBP12.95□□□□□ -0.34
HDAC9-228ENST00000524023 PCDHA7Q9UN72 937 aa12.95□□□□□ -0.34
HDAC9-228ENST00000524023 ZNF330Q9Y3S2 320 aaPredicted RBP12.95□□□□□ -0.34
HDAC9-228ENST00000524023 IFIT5Q13325 482 aaKnown RBP12.94□□□□□ -0.34
HDAC9-228ENST00000524023 ZBTB38Q8NAP3 1195 aaPredicted RBP12.94□□□□□ -0.34
HDAC9-228ENST00000524023 HPS5Q9UPZ3 1129 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 KLF18A0A0U1RQI7 1052 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 RIOK3O14730 519 aaKnown RBP12.94□□□□□ -0.34
HDAC9-228ENST00000524023 ANTXR2P58335 489 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 CCDC144BQ3MJ40 725 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 HSP90AB3PQ58FF7 597 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 ADALQ6DHV7 355 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 OTUD7BQ6GQQ9 843 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 PI16Q6UXB8 463 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 KIF6Q6ZMV9 814 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 CCDC144CPQ8IYA2 1237 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 FMR1NBQ8N0W7 255 aaPredicted RBP12.94□□□□□ -0.34
HDAC9-228ENST00000524023 CACTINQ8WUQ7 758 aaKnown RBP12.94□□□□□ -0.34
HDAC9-228ENST00000524023 MRPS27Q92552 414 aaKnown RBP12.94□□□□□ -0.34
HDAC9-228ENST00000524023 MRFAP1L1Q96HT8 127 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 ANO10Q9NW15 660 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 TMOD3Q9NYL9 352 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 AKAP11Q9UKA4 1901 aa12.94□□□□□ -0.34
HDAC9-228ENST00000524023 RIC1Q4ADV7 1423 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 A0A1W2PQ27 194 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 A0A1W2PQ64 194 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 A0A1W2PQD8 194 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 GPAA1O43292 621 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 DHX16O60231 1041 aaKnown RBP12.93□□□□□ -0.34
HDAC9-228ENST00000524023 DHX40Q8IX18 779 aaKnown RBP12.93□□□□□ -0.34
HDAC9-228ENST00000524023 LINC00301Q8NCQ3 95 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 NCOA7Q8NI08 942 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 C8orf76Q96K31 380 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-228ENST00000524023 GOLGA8BA8MQT2 603 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 BECN2A8MW95 431 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 DNAJC10Q8IXB1 793 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 FBXO18Q8NFZ0 1043 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 TEX13AQ9BXU3 409 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-228ENST00000524023 BCL2L12Q9HB09 334 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 ORC3Q9UBD5 711 aaPredicted RBP12.93□□□□□ -0.34
HDAC9-228ENST00000524023 RIPOR2Q9Y4F9 1068 aa12.93□□□□□ -0.34
HDAC9-228ENST00000524023 SOS2Q07890 1332 aaPredicted RBP12.92□□□□□ -0.34
HDAC9-228ENST00000524023 WDR19Q8NEZ3 1342 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 A0A087WWV3 80 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 FAM177BA6PVY3 158 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 ZNF213O14771 459 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 ATP2B3Q16720 1220 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 RALYLQ86SE5 291 aaKnown RBP12.92□□□□□ -0.34
HDAC9-228ENST00000524023 STRN4Q9NRL3 753 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 POLR3EQ9NVU0 708 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 CLIC4Q9Y696 253 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 ABCA3Q99758 1704 aa12.92□□□□□ -0.34
HDAC9-228ENST00000524023 A0A1B0GVL5 298 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 YEATS4O95619 227 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 POLR3DP05423 398 aaPredicted RBP12.91□□□□□ -0.34
HDAC9-228ENST00000524023 MCAMP43121 646 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 STK38Q15208 465 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 METTL24Q5JXM2 366 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 GIGYF2Q6Y7W6 1299 aaKnown RBP12.91□□□□□ -0.34
HDAC9-228ENST00000524023 BRAPQ7Z569 592 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 CEP57L1Q8IYX8 460 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 SYNE4Q8N205 404 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 KCNG4Q8TDN1 519 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.91□□□□□ -0.34
HDAC9-228ENST00000524023 ASAP1Q9ULH1 1129 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 MAP3K15Q6ZN16 1313 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 CDHR2Q9BYE9 1310 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 C4AP0C0L4 1744 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 C4BP0C0L5 1744 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 CPLX1O14810 134 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 NDUFA8P51970 172 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 SF3A1Q15459 793 aaKnown RBP12.91□□□□□ -0.34
HDAC9-228ENST00000524023 MYSM1Q5VVJ2 828 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 LDHAL6AQ6ZMR3 332 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 LRRC8AQ8IWT6 810 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 TTLL11Q8NHH1 800 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 ERCC4Q92889 916 aaPredicted RBP12.91□□□□□ -0.34
HDAC9-228ENST00000524023 SDF4Q9BRK5 362 aa12.91□□□□□ -0.34
HDAC9-228ENST00000524023 MYO5AQ9Y4I1 1855 aaKnown RBP12.9□□□□□ -0.34
HDAC9-228ENST00000524023 CTIFO43310 598 aaKnown RBP12.9□□□□□ -0.34
HDAC9-228ENST00000524023 ITGA6P23229 1130 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 EVA1CP58658 441 aa12.9□□□□□ -0.34
HDAC9-228ENST00000524023 RAB11FIP4Q86YS3 637 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms